1 HAMP#1
88-157 aa · 70 aa · 18.0% of protein
Raw token
HAMP:88:0.0000000000019:157:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS04075
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength388 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS04075Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length388 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 388 aa (65.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa388 aa
Domain-by-domain annotation3 items
2 HisKA#2
161-223 aa · 63 aa · 16.2% of protein
Raw token
HisKA:161:0.0000000000359:223:63:643 HATPase_c#3
269-388 aa · 120 aa · 30.9% of protein
Raw token
HATPase_c:269:3.19e-29:388:120:109- Raw architecture: HAMP:88:0.0000000000019:157:70:69#HisKA:161:0.0000000000359:223:63:64#HATPase_c:269:3.19e-29:388:120:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000003.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117357-119197Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_04085RefSeq proteinWP_110102906.1
Context group ID
GCF_020686995::NZ_JAJEPT010000003.1::G00039Context members
LKD46_RS04075LKD46_RS04080
Partner locus tags
LKD46_RS04075LKD46_RS04080
Partner old locus tags
LKD46_04085LKD46_04090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110102906.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS04075Primary locus identifier stored in the genes table.
Old locus tagLKD46_04085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000003.1Sequence record reported by the local genomic context database.
Genomic interval117 357-118 523 nt1 167 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 357-119 197 ntGCF_020686995::NZ_JAJEPT010000003.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000003.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000003.1All displayed genes belong to this local TCS context.
Neighborhood span117 357-119 197 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 357 nt119 197 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS04075GCF_020686995#LKD46_RS04075
HKClassicCurrent focus
117 357-118 523 nt · Reverse (-)
LKD46_RS04080GCF_020686995#LKD46_RS04080
RROmpR
118 520-119 197 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS06820Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2544159
Simplified PFAM architecture for HKOC_2544159
PFAM domain coverage: 231 / 388 aa (59.5%)
1 aa388 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[104-156] | HisKA[161-222] | HATPase_c[272-387]
- Domain count: 3
- Matched identifier: HKOC_2544159
- Positioned domains: HAMP 104-156 ; HisKA 161-222 ; HATPase_c 272-387
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS06820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key