1 dCache_1#1
46-286 aa · 241 aa · 40.5% of protein
Raw token
dCache_1:46:3.91e-22:286:246:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS03880
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS03880Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage500 / 595 aa (84.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation4 items
2 HAMP#2
305-374 aa · 70 aa · 11.8% of protein
Raw token
HAMP:305:0.0000000000000108:374:70:693 His_kinase#3
389-468 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:389:7.58e-34:468:80:804 HATPase_c#4
480-588 aa · 109 aa · 18.3% of protein
Raw token
HATPase_c:480:0.00000000000000177:588:113:109- Raw architecture: dCache_1:46:3.91e-22:286:246:195#HAMP:305:0.0000000000000108:374:70:69#His_kinase:389:7.58e-34:468:80:80#HATPase_c:480:0.00000000000000177:588:113:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000003.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67786-71186Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_03890RefSeq proteinWP_015527303.1
Context group ID
GCF_020686995::NZ_JAJEPT010000003.1::G00037Context members
LKD46_RS03875LKD46_RS03880
Partner locus tags
LKD46_RS03875LKD46_RS03880
Partner old locus tags
LKD46_03885LKD46_03890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015527303.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5CII6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5CII6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS03880Primary locus identifier stored in the genes table.
Old locus tagLKD46_03890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000003.1Sequence record reported by the local genomic context database.
Genomic interval69 399-71 186 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 786-71 186 ntGCF_020686995::NZ_JAJEPT010000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000003.1All displayed genes belong to this local TCS context.
Neighborhood span67 786-71 186 nt3 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 786 nt71 186 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS03875GCF_020686995#LKD46_RS03875
RRunclassified
67 786-69 402 nt · Forward (+)
LKD46_RS03880GCF_020686995#LKD46_RS03880
HKClassicCurrent focus
69 399-71 186 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS16660Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1079712
Simplified PFAM architecture for HKOC_1079712
PFAM domain coverage: 471 / 595 aa (79.2%)
1 aa595 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[55-286] | HAMP[321-374] | His_kinase[389-468] | HATPase_c[484-588]
- Domain count: 4
- Matched identifier: HKOC_1079712
- Positioned domains: dCache_1 55-286 ; HAMP 321-374 ; His_kinase 389-468 ; HATPase_c 484-588
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS16660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key