1 Response_reg#1
4-116 aa · 113 aa · 21.0% of protein
Raw token
Response_reg:4:1.4e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS03875
Response regulator, unclassified
Blautia fusiformis · GCF_020686995
ClassRRTypeunclassifiedLength538 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS03875Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length538 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 538 aa (27.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa538 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
450-483 aa · 34 aa · 6.3% of protein
Raw token
HTH_AraC:450:0.0000183:483:34:42- Raw architecture: Response_reg:4:1.4e-26:116:113:111#HTH_AraC:450:0.0000183:483:34:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000003.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67786-71186Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_03885RefSeq proteinWP_059086074.1
Context group ID
GCF_020686995::NZ_JAJEPT010000003.1::G00037Context members
LKD46_RS03875LKD46_RS03880
Partner locus tags
LKD46_RS03875LKD46_RS03880
Partner old locus tags
LKD46_03885LKD46_03890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_059086074.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS03875Primary locus identifier stored in the genes table.
Old locus tagLKD46_03885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000003.1Sequence record reported by the local genomic context database.
Genomic interval67 786-69 402 nt1 617 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 786-71 186 ntGCF_020686995::NZ_JAJEPT010000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000003.1All displayed genes belong to this local TCS context.
Neighborhood span67 786-71 186 nt3 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 786 nt71 186 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS03875GCF_020686995#LKD46_RS03875
RRunclassifiedCurrent focus
67 786-69 402 nt · Forward (+)
LKD46_RS03880GCF_020686995#LKD46_RS03880
HKClassic
69 399-71 186 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001487165#BN3261_RS09085Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0094283
Simplified PFAM architecture for RROC_0094283
PFAM domain coverage: 325 / 538 aa (60.4%)
1 aa538 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[167-300] | HTH_18[457-534]
- Domain count: 3
- Matched identifier: RROC_0094283
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 167-300 ; GGDEF_2 167-300 ; HTH_18 457-534 ; HTH_18 457-534
Cluster members and taxonomy
Representative gene: GCF_001487165#BN3261_RS09085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key