1 Response_reg#1
5-105 aa · 101 aa · 19.1% of protein
Raw token
Response_reg:5:2.32e-30:105:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS02050
Response regulator, unclassified
Blautia fusiformis · GCF_020686995
ClassRRTypeunclassifiedLength528 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS02050Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length528 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 528 aa (34.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa528 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
432-473 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:432:0.00000163:473:42:423 HTH_AraC#3
487-523 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:487:0.00000000221:523:37:42- Raw architecture: Response_reg:5:2.32e-30:105:101:111#HTH_AraC:432:0.00000163:473:42:42#HTH_AraC:487:0.00000000221:523:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000002.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36864-40189Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_02060RefSeq proteinWP_173723202.1
Context group ID
GCF_020686995::NZ_JAJEPT010000002.1::G00033Context members
LKD46_RS02045LKD46_RS02050
Partner locus tags
LKD46_RS02045LKD46_RS02050
Partner old locus tags
LKD46_02055LKD46_02060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173723202.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS02050Primary locus identifier stored in the genes table.
Old locus tagLKD46_02060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000002.1Sequence record reported by the local genomic context database.
Genomic interval38 603-40 189 nt1 587 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 864-40 189 ntGCF_020686995::NZ_JAJEPT010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000002.1All displayed genes belong to this local TCS context.
Neighborhood span36 864-40 189 nt3 326 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 864 nt40 189 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS02045GCF_020686995#LKD46_RS02045
HKClassic
36 864-38 603 nt · Forward (+)
LKD46_RS02050GCF_020686995#LKD46_RS02050
RRunclassifiedCurrent focus
38 603-40 189 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302285#G5A89_RS12345Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0114977
Simplified PFAM architecture for RROC_0114977
PFAM domain coverage: 189 / 528 aa (35.8%)
1 aa528 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[446-523]
- Domain count: 2
- Matched identifier: RROC_0114977
- Positioned domains: Response_reg 5-115 ; HTH_18 446-523
Cluster members and taxonomy
Representative gene: GCF_013302285#G5A89_RS12345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key