1 dCache_1#1
36-258 aa · 223 aa · 38.5% of protein
Raw token
dCache_1:36:0.00000000000535:258:223:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS02045
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength579 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS02045Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length579 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage477 / 579 aa (82.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa579 aa
Domain-by-domain annotation4 items
2 HAMP#2
284-353 aa · 70 aa · 12.1% of protein
Raw token
HAMP:284:0.00000000000000281:353:70:693 His_kinase#3
368-447 aa · 80 aa · 13.8% of protein
Raw token
His_kinase:368:1.56e-25:447:80:804 HATPase_c#4
464-567 aa · 104 aa · 18.0% of protein
Raw token
HATPase_c:464:0.0000000000000128:567:109:109- Raw architecture: dCache_1:36:0.00000000000535:258:223:195#HAMP:284:0.00000000000000281:353:70:69#His_kinase:368:1.56e-25:447:80:80#HATPase_c:464:0.0000000000000128:567:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000002.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36864-40189Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_02055RefSeq proteinWP_110103013.1
Context group ID
GCF_020686995::NZ_JAJEPT010000002.1::G00033Context members
LKD46_RS02045LKD46_RS02050
Partner locus tags
LKD46_RS02045LKD46_RS02050
Partner old locus tags
LKD46_02055LKD46_02060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110103013.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS02045Primary locus identifier stored in the genes table.
Old locus tagLKD46_02055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000002.1Sequence record reported by the local genomic context database.
Genomic interval36 864-38 603 nt1 740 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 864-40 189 ntGCF_020686995::NZ_JAJEPT010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000002.1All displayed genes belong to this local TCS context.
Neighborhood span36 864-40 189 nt3 326 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 864 nt40 189 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS02045GCF_020686995#LKD46_RS02045
HKClassicCurrent focus
36 864-38 603 nt · Forward (+)
LKD46_RS02050GCF_020686995#LKD46_RS02050
RRunclassified
38 603-40 189 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS07960Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1168303
Simplified PFAM architecture for HKOC_1168303
PFAM domain coverage: 233 / 579 aa (40.2%)
1 aa579 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[301-352] | His_kinase[368-445] | HATPase_c[466-568]
- Domain count: 3
- Matched identifier: HKOC_1168303
- Positioned domains: HAMP 301-352 ; His_kinase 368-445 ; HATPase_c 466-568
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS07960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key