1 Response_reg#1
53-132 aa · 80 aa · 31.5% of protein
Raw token
Response_reg:53:0.000000109:132:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS01625
Response regulator LytTR family
Blautia fusiformis · GCF_020686995
ClassRRTypeLytTRLength254 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020686995#LKD46_RS01625Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length254 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 254 aa (63.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa254 aa
Domain-by-domain annotation2 items
2 LytTR#2
164-244 aa · 81 aa · 31.9% of protein
Raw token
LytTR:164:0.00000000000000236:244:87:98- Raw architecture: Response_reg:53:0.000000109:132:87:111#LytTR:164:0.00000000000000236:244:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020686995::NZ_JAJEPT010000001.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span331736-332500Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_01635RefSeq proteinWP_173753887.1
Context group ID
GCF_020686995::NZ_JAJEPT010000001.1::G00026Context members
LKD46_RS01625
Partner locus tags
LKD46_RS01625
Partner old locus tags
LKD46_01635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173753887.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS01625Primary locus identifier stored in the genes table.
Old locus tagLKD46_01635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000001.1Sequence record reported by the local genomic context database.
Genomic interval331 736-332 500 nt765 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span331 736-332 500 ntGCF_020686995::NZ_JAJEPT010000001.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000001.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000001.1All displayed genes belong to this local TCS context.
Neighborhood span331 736-332 500 nt765 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
331 736 nt332 500 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LKD46_RS01625GCF_020686995#LKD46_RS01625
RRLytTRCurrent focus
331 736-332 500 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS09350Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0690604
Simplified PFAM architecture for RROC_0690604
PFAM domain coverage: 89 / 254 aa (35.0%)
1 aa254 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[154-242]
- Domain count: 1
- Matched identifier: RROC_0690604
- Positioned domains: LytTR 154-242
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS09350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key