1 HisKA#1
83-148 aa · 66 aa · 21.6% of protein
Raw token
HisKA:83:0.000000212:148:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS00495
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS00495Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 305 aa (56.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-300 aa · 105 aa · 34.4% of protein
Raw token
HATPase_c:196:4.75e-28:300:105:109- Raw architecture: HisKA:83:0.000000212:148:66:64#HATPase_c:196:4.75e-28:300:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000001.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90523-92135Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_00495RefSeq proteinWP_117843973.1
Context group ID
GCF_020686995::NZ_JAJEPT010000001.1::G00021Context members
LKD46_RS00490LKD46_RS00495
Partner locus tags
LKD46_RS00490LKD46_RS00495
Partner old locus tags
LKD46_00490LKD46_00495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117843973.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1AG05Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1AG05_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS00495Primary locus identifier stored in the genes table.
Old locus tagLKD46_00495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000001.1Sequence record reported by the local genomic context database.
Genomic interval91 218-92 135 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span90 523-92 135 ntGCF_020686995::NZ_JAJEPT010000001.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000001.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000001.1All displayed genes belong to this local TCS context.
Neighborhood span90 523-92 135 nt1 613 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 523 nt92 135 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS00490GCF_020686995#LKD46_RS00490
RROmpR
90 523-91 212 nt · Forward (+)
LKD46_RS00495GCF_020686995#LKD46_RS00495
HKClassicCurrent focus
91 218-92 135 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468995#DW767_RS16285Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882350
Simplified PFAM architecture for HKOC_2882350
PFAM domain coverage: 169 / 305 aa (55.4%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[84-147] | HATPase_c[196-300]
- Domain count: 2
- Matched identifier: HKOC_2882350
- Positioned domains: HisKA 84-147 ; HATPase_c 196-300
Cluster members and taxonomy
Representative gene: GCF_003468995#DW767_RS16285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key