1 HAMP#1
307-375 aa · 69 aa · 11.2% of protein
Raw token
HAMP:307:0.00000000181:375:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LJE11_RS00105
Histidine kinase, Classic
Blautia sp. DFI.1.216 · GCF_020594215
ClassHKTypeClassicLength618 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020594215#LJE11_RS00105Stable P2CS identifier used across views.
GenomeGCF_020594215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length618 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 618 aa (40.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 His_kinase#2
392-470 aa · 79 aa · 12.8% of protein
Raw token
His_kinase:392:4.75e-24:470:80:803 HATPase_c#3
489-591 aa · 103 aa · 16.7% of protein
Raw token
HATPase_c:489:0.000000000000317:591:107:109- Raw architecture: HAMP:307:0.00000000181:375:69:69#His_kinase:392:4.75e-24:470:80:80#HATPase_c:489:0.000000000000317:591:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020594215::NZ_JAJDML010000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span24442-26298Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLJE11_00105RefSeq proteinWP_008704488.1
Context group ID
GCF_020594215::NZ_JAJDML010000001.1::G00002Context members
LJE11_RS00105
Partner locus tags
LJE11_RS00105
Partner old locus tags
LJE11_00105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008704488.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLJE11_RS00105Primary locus identifier stored in the genes table.
Old locus tagLJE11_00105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJDML010000001.1Sequence record reported by the local genomic context database.
Genomic interval24 442-26 298 nt1 857 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 442-26 298 ntGCF_020594215::NZ_JAJDML010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020594215::NZ_JAJDML010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJDML010000001.1All displayed genes belong to this local TCS context.
Neighborhood span24 442-26 298 nt1 857 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 442 nt26 298 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LJE11_RS00105GCF_020594215#LJE11_RS00105
HKClassicCurrent focus
24 442-26 298 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020594215#LJE11_RS00105The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0979981
Simplified PFAM architecture for HKOC_0979981
PFAM domain coverage: 181 / 618 aa (29.3%)
1 aa618 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[393-469] | HATPase_c[489-592]
- Domain count: 2
- Matched identifier: HKOC_0979981
- Positioned domains: His_kinase 393-469 ; HATPase_c 489-592
Cluster members and taxonomy
Representative gene: GCF_020594215#LJE11_RS00105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 885 264 · GCF_020594215
AssemblyASM2059421v1 · Contighaploid
Genome composition4 167 967 bp · 41,5% GCBlautia sp. DFI.1.216
Signal transduction countsGenes 120 · HK 59 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key