1 HAMP#1
175-244 aa · 70 aa · 14.6% of protein
Raw token
HAMP:175:7.11e-16:244:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI211_RS07265
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020562235
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020562235#LI211_RS07265Stable P2CS identifier used across views.
GenomeGCF_020562235Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 479 aa (48.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation3 items
2 HisKA#2
259-315 aa · 57 aa · 11.9% of protein
Raw token
HisKA:259:0.00000000115:315:57:643 HATPase_c#3
365-471 aa · 107 aa · 22.3% of protein
Raw token
HATPase_c:365:7.79e-25:471:107:109- Raw architecture: HAMP:175:7.11e-16:244:70:69#HisKA:259:0.00000000115:315:57:64#HATPase_c:365:7.79e-25:471:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020562235::NZ_JAJCOS010000008.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120838-122933Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI211_07265RefSeq proteinWP_118232511.1
Context group ID
GCF_020562235::NZ_JAJCOS010000008.1::G00025Context members
LI211_RS07265LI211_RS07270
Partner locus tags
LI211_RS07265LI211_RS07270
Partner old locus tags
LI211_07265LI211_07270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118232511.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI211_RS07265Primary locus identifier stored in the genes table.
Old locus tagLI211_07265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCOS010000008.1Sequence record reported by the local genomic context database.
Genomic interval120 838-122 277 nt1 440 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 838-122 933 ntGCF_020562235::NZ_JAJCOS010000008.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020562235::NZ_JAJCOS010000008.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCOS010000008.1All displayed genes belong to this local TCS context.
Neighborhood span120 838-122 933 nt2 096 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 838 nt122 933 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI211_RS07265GCF_020562235#LI211_RS07265
HKClassicCurrent focus
120 838-122 277 nt · Reverse (-)
LI211_RS07270GCF_020562235#LI211_RS07270
RROmpR
122 277-122 933 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457805#DWY98_RS10200Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1630220
Simplified PFAM architecture for HKOC_1630220
PFAM domain coverage: 217 / 479 aa (45.3%)
1 aa479 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[193-243] | HisKA[257-315] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1630220
- Positioned domains: HAMP 193-243 ; HisKA 257-315 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_003457805#DWY98_RS10200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020562235
AssemblyASM2056223v1 · Contighaploid
Genome composition3 302 534 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 48 · HK 22 · RR 26CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key