1 HisKA#1
476-542 aa · 67 aa · 9.6% of protein
Raw token
HisKA:476:1.67e-18:542:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI211_RS01850
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020562235
ClassHKTypeClassicLength695 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020562235#LI211_RS01850Stable P2CS identifier used across views.
GenomeGCF_020562235Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length695 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 695 aa (23.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa695 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
589-681 aa · 93 aa · 13.4% of protein
Raw token
HATPase_c:589:0.0000000000454:681:97:109- Raw architecture: HisKA:476:1.67e-18:542:67:64#HATPase_c:589:0.0000000000454:681:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020562235::NZ_JAJCOS010000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37452-40258Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI211_01850RefSeq proteinWP_003537105.1
Context group ID
GCF_020562235::NZ_JAJCOS010000002.1::G00010Context members
LI211_RS01845LI211_RS01850
Partner locus tags
LI211_RS01845LI211_RS01850
Partner old locus tags
LI211_01845LI211_01850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003537105.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q3A124Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q3A124_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI211_RS01850Primary locus identifier stored in the genes table.
Old locus tagLI211_01850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCOS010000002.1Sequence record reported by the local genomic context database.
Genomic interval38 171-40 258 nt2 088 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 452-40 258 ntGCF_020562235::NZ_JAJCOS010000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020562235::NZ_JAJCOS010000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCOS010000002.1All displayed genes belong to this local TCS context.
Neighborhood span37 452-40 258 nt2 807 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 452 nt40 258 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI211_RS01845GCF_020562235#LI211_RS01845
RROmpR
37 452-38 162 nt · Forward (+)
LI211_RS01850GCF_020562235#LI211_RS01850
HKClassicCurrent focus
38 171-40 258 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS07830Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0779732
Simplified PFAM architecture for HKOC_0779732
PFAM domain coverage: 160 / 695 aa (23.0%)
1 aa695 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[476-542] | HATPase_c[589-681]
- Domain count: 2
- Matched identifier: HKOC_0779732
- Positioned domains: HisKA 476-542 ; HATPase_c 589-681
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS07830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020562235
AssemblyASM2056223v1 · Contighaploid
Genome composition3 302 534 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 48 · HK 22 · RR 26CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key