1 HisKA#1
45-101 aa · 57 aa · 24.9% of protein
Raw token
HisKA:45:0.0000000000000849:101:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI211_RS03400
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020562235
ClassHKTypeClassicLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020562235#LI211_RS03400Stable P2CS identifier used across views.
GenomeGCF_020562235Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage137 / 229 aa (59.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
150-229 aa · 80 aa · 34.9% of protein
Raw token
HATPase_c:150:0.00000000000299:229:85:109- Raw architecture: HisKA:45:0.0000000000000849:101:57:64#HATPase_c:150:0.00000000000299:229:85:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020562235::NZ_JAJCOS010000003.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span127570-128259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI211_03400RefSeq proteinWP_227166706.1
Context group ID
GCF_020562235::NZ_JAJCOS010000003.1::G00019Context members
LI211_RS03400
Partner locus tags
LI211_RS03400
Partner old locus tags
LI211_03400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227166706.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI211_RS03400Primary locus identifier stored in the genes table.
Old locus tagLI211_03400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCOS010000003.1Sequence record reported by the local genomic context database.
Genomic interval127 570-128 259 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span127 570-128 259 ntGCF_020562235::NZ_JAJCOS010000003.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020562235::NZ_JAJCOS010000003.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCOS010000003.1All displayed genes belong to this local TCS context.
Neighborhood span127 570-128 259 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 570 nt128 259 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LI211_RS03400GCF_020562235#LI211_RS03400
HKClassicCurrent focus
127 570-128 259 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015670235#I4V48_RS03695Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2925815
Simplified PFAM architecture for HKOC_2925815
PFAM domain coverage: 138 / 231 aa (59.7%)
1 aa231 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[44-101] | HATPase_c[150-229]
- Domain count: 2
- Matched identifier: HKOC_2925815
- Positioned domains: HisKA 44-101 ; HATPase_c 150-229
Cluster members and taxonomy
Representative gene: GCF_015670235#I4V48_RS03695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020562235
AssemblyASM2056223v1 · Contighaploid
Genome composition3 302 534 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 48 · HK 22 · RR 26CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key