1 Response_reg#1
6-114 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:6:4.71e-32:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI213_RS04195
Response regulator OmpR family
Thomasclavelia ramosa · GCF_020562205
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020562205#LI213_RS04195Stable P2CS identifier used across views.
GenomeGCF_020562205Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 236 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-233 aa · 76 aa · 32.2% of protein
Raw token
Trans_reg_C:158:1.75e-29:233:77:77- Raw architecture: Response_reg:6:4.71e-32:114:110:111#Trans_reg_C:158:1.75e-29:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020562205::NZ_JAJCOT010000003.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span199741-202547Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI213_04185RefSeq proteinWP_227140962.1
Context group ID
GCF_020562205::NZ_JAJCOT010000003.1::G00015Context members
LI213_RS04190LI213_RS04195
Partner locus tags
LI213_RS04190LI213_RS04195
Partner old locus tags
LI213_04180LI213_04185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227140962.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI213_RS04195Primary locus identifier stored in the genes table.
Old locus tagLI213_04185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCOT010000003.1Sequence record reported by the local genomic context database.
Genomic interval201 837-202 547 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span199 741-202 547 ntGCF_020562205::NZ_JAJCOT010000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020562205::NZ_JAJCOT010000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCOT010000003.1All displayed genes belong to this local TCS context.
Neighborhood span199 741-202 547 nt2 807 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
199 741 nt202 547 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI213_RS04190GCF_020562205#LI213_RS04190
HKClassic
199 741-201 828 nt · Reverse (-)
LI213_RS04195GCF_020562205#LI213_RS04195
RROmpRCurrent focus
201 837-202 547 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020559845#LI118_RS04190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1002778
Simplified PFAM architecture for RROC_1002778
PFAM domain coverage: 184 / 236 aa (78.0%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[158-232]
- Domain count: 2
- Matched identifier: RROC_1002778
- Positioned domains: Response_reg 6-114 ; Trans_reg_C 158-232
Cluster members and taxonomy
Representative gene: GCF_020559845#LI118_RS04190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020562205
AssemblyASM2056220v1 · Contighaploid
Genome composition3 513 884 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 49 · HK 23 · RR 26CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key