1 Response_reg#1
6-105 aa · 100 aa · 45.2% of protein
Raw token
Response_reg:6:0.000000000969:105:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI213_RS03575
Response regulator, unclassified
Thomasclavelia ramosa · GCF_020562205
ClassRRTypeunclassifiedLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020562205#LI213_RS03575Stable P2CS identifier used across views.
GenomeGCF_020562205Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage100 / 221 aa (45.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:0.000000000969:105:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020562205::NZ_JAJCOT010000003.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span53754-54419Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI213_03565RefSeq proteinWP_202782664.1
Context group ID
GCF_020562205::NZ_JAJCOT010000003.1::G00012Context members
LI213_RS03575
Partner locus tags
LI213_RS03575
Partner old locus tags
LI213_03565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_202782664.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35IFP2Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35IFP2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI213_RS03575Primary locus identifier stored in the genes table.
Old locus tagLI213_03565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCOT010000003.1Sequence record reported by the local genomic context database.
Genomic interval53 754-54 419 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 754-54 419 ntGCF_020562205::NZ_JAJCOT010000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020562205::NZ_JAJCOT010000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCOT010000003.1All displayed genes belong to this local TCS context.
Neighborhood span53 754-54 419 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 754 nt54 419 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LI213_RS03575GCF_020562205#LI213_RS03575
RRunclassifiedCurrent focus
53 754-54 419 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016766855#I6I63_RS14310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1695564
Simplified PFAM architecture for RROC_1695564
PFAM domain coverage: 190 / 221 aa (86.0%)
1 aa221 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-105] | LytTR[126-214]
- Domain count: 2
- Matched identifier: RROC_1695564
- Positioned domains: Response_reg 5-105 ; LytTR 126-214
Cluster members and taxonomy
Representative gene: GCF_016766855#I6I63_RS14310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020562205
AssemblyASM2056220v1 · Contighaploid
Genome composition3 513 884 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 49 · HK 23 · RR 26CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key