1 sCache_like#1
76-139 aa · 64 aa · 11.3% of protein
Raw token
sCache_like:76:0.000000201:139:70:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI213_RS04175
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020562205
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020562205#LI213_RS04175Stable P2CS identifier used across views.
GenomeGCF_020562205Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_8HisKAHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage274 / 565 aa (48.5%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation4 items
2 PAS_8#2
242-275 aa · 34 aa · 6.0% of protein
Raw token
PAS_8:242:0.0000276:275:34:653 HisKA#3
339-405 aa · 67 aa · 11.9% of protein
Raw token
HisKA:339:5.43e-19:405:67:644 HATPase_c#4
454-562 aa · 109 aa · 19.3% of protein
Raw token
HATPase_c:454:6.47e-30:562:109:109- Raw architecture: sCache_like:76:0.000000201:139:70:114#PAS_8:242:0.0000276:275:34:65#HisKA:339:5.43e-19:405:67:64#HATPase_c:454:6.47e-30:562:109:109
- Domain description: 1 sCache_like,1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020562205::NZ_JAJCOT010000003.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span195546-197913Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI213_04165RefSeq proteinWP_117561959.1
Context group ID
GCF_020562205::NZ_JAJCOT010000003.1::G00014Context members
LI213_RS04170LI213_RS04175
Partner locus tags
LI213_RS04170LI213_RS04175
Partner old locus tags
LI213_04160LI213_04165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117561959.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI213_RS04175Primary locus identifier stored in the genes table.
Old locus tagLI213_04165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCOT010000003.1Sequence record reported by the local genomic context database.
Genomic interval196 216-197 913 nt1 698 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span195 546-197 913 ntGCF_020562205::NZ_JAJCOT010000003.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020562205::NZ_JAJCOT010000003.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCOT010000003.1All displayed genes belong to this local TCS context.
Neighborhood span195 546-197 913 nt2 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
195 546 nt197 913 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI213_RS04170GCF_020562205#LI213_RS04170
RROmpR
195 546-196 229 nt · Forward (+)
LI213_RS04175GCF_020562205#LI213_RS04175
HKClassicCurrent focus
196 216-197 913 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434415#DW242_RS11510Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1235606
Simplified PFAM architecture for HKOC_1235606
PFAM domain coverage: 176 / 565 aa (31.2%)
1 aa565 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[339-405] | HATPase_c[453-561]
- Domain count: 2
- Matched identifier: HKOC_1235606
- Positioned domains: HisKA 339-405 ; HATPase_c 453-561
Cluster members and taxonomy
Representative gene: GCF_003434415#DW242_RS11510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020562205
AssemblyASM2056220v1 · Contighaploid
Genome composition3 513 884 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 49 · HK 23 · RR 26CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key