1 GGDEF#1
138-276 aa · 139 aa · 21.1% of protein
Raw token
GGDEF:138:7.83e-39:276:151:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI147_RS08295
Response regulator, RpfG family
Blautia wexlerae · GCF_020560345
ClassRRTypeRpfGLength659 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020560345#LI147_RS08295Stable P2CS identifier used across views.
GenomeGCF_020560345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length659 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage352 / 659 aa (53.4%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa659 aa
Domain-by-domain annotation3 items
2 Response_reg#2
304-415 aa · 112 aa · 17.0% of protein
Raw token
Response_reg:304:1.54e-30:415:113:1113 HD#3
496-596 aa · 101 aa · 15.3% of protein
Raw token
HD:496:0.0000000000143:596:101:110- Raw architecture: GGDEF:138:7.83e-39:276:151:160#Response_reg:304:1.54e-30:415:113:111#HD:496:0.0000000000143:596:101:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020560345::NZ_JAJCMK010000015.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span69328-71307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI147_08300RefSeq proteinWP_144137169.1
Context group ID
GCF_020560345::NZ_JAJCMK010000015.1::G00013Context members
LI147_RS08295
Partner locus tags
LI147_RS08295
Partner old locus tags
LI147_08300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_144137169.1Primary protein accession used for annex mappings.
UniProt accessionA0A564WV52Primary UniProt accession resolved in the annex database.
UniProt IDA0A564WV52_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI147_RS08295Primary locus identifier stored in the genes table.
Old locus tagLI147_08300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCMK010000015.1Sequence record reported by the local genomic context database.
Genomic interval69 328-71 307 nt1 980 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span69 328-71 307 ntGCF_020560345::NZ_JAJCMK010000015.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020560345::NZ_JAJCMK010000015.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCMK010000015.1All displayed genes belong to this local TCS context.
Neighborhood span69 328-71 307 nt1 980 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 328 nt71 307 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LI147_RS08295GCF_020560345#LI147_RS08295
RRRpfGCurrent focus
69 328-71 307 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299555#G4441_RS06845Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0034992
Simplified PFAM architecture for RROC_0034992
PFAM domain coverage: 387 / 659 aa (58.7%)
1 aa659 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[137-278] | Response_reg[304-415] | HD_5[483-615]
- Domain count: 3
- Matched identifier: RROC_0034992
- Positioned domains: GGDEF 137-278 ; Response_reg 304-415 ; HD_5 483-615
Cluster members and taxonomy
Representative gene: GCF_013299555#G4441_RS06845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_020560345
AssemblyASM2056034v1 · Contighaploid
Genome composition4 076 393 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key