1 Response_reg#1
3-108 aa · 106 aa · 44.5% of protein
Raw token
Response_reg:3:2.95e-21:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI147_RS03375
Response regulator LytTR family
Blautia wexlerae · GCF_020560345
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020560345#LI147_RS03375Stable P2CS identifier used across views.
GenomeGCF_020560345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 238 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-227 aa · 92 aa · 38.7% of protein
Raw token
LytTR:136:4.95e-16:227:101:98- Raw architecture: Response_reg:3:2.95e-21:108:108:111#LytTR:136:4.95e-16:227:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020560345::NZ_JAJCMK010000004.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span74509-75225Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI147_03375RefSeq proteinWP_020993721.1
Context group ID
GCF_020560345::NZ_JAJCMK010000004.1::G00031Context members
LI147_RS03375
Partner locus tags
LI147_RS03375
Partner old locus tags
LI147_03375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020993721.1Primary protein accession used for annex mappings.
UniProt accessionA0A564WWK2Primary UniProt accession resolved in the annex database.
UniProt IDA0A564WWK2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI147_RS03375Primary locus identifier stored in the genes table.
Old locus tagLI147_03375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCMK010000004.1Sequence record reported by the local genomic context database.
Genomic interval74 509-75 225 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span74 509-75 225 ntGCF_020560345::NZ_JAJCMK010000004.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020560345::NZ_JAJCMK010000004.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCMK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span74 509-75 225 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 509 nt75 225 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LI147_RS03375GCF_020560345#LI147_RS03375
RRLytTRCurrent focus
74 509-75 225 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040916245#AB5280_RS16270Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0593111
Simplified PFAM architecture for RROC_0593111
PFAM domain coverage: 202 / 284 aa (71.1%)
1 aa284 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[49-160] | LytTR[184-273]
- Domain count: 2
- Matched identifier: RROC_0593111
- Positioned domains: Response_reg 49-160 ; LytTR 184-273
Cluster members and taxonomy
Representative gene: GCF_040916245#AB5280_RS16270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_020560345
AssemblyASM2056034v1 · Contighaploid
Genome composition4 076 393 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key