1 His_kinase#1
371-448 aa · 78 aa · 13.5% of protein
Raw token
His_kinase:371:4.87e-28:448:78:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI147_RS02570
Histidine kinase, Classic
Blautia wexlerae · GCF_020560345
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020560345#LI147_RS02570Stable P2CS identifier used across views.
GenomeGCF_020560345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 577 aa (32.4%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
467-575 aa · 109 aa · 18.9% of protein
Raw token
HATPase_c:467:0.0000000045:575:112:109- Raw architecture: His_kinase:371:4.87e-28:448:78:80#HATPase_c:467:0.0000000045:575:112:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020560345::NZ_JAJCMK010000003.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69735-73088Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI147_02570RefSeq proteinWP_227218100.1
Context group ID
GCF_020560345::NZ_JAJCMK010000003.1::G00024Context members
LI147_RS02565LI147_RS02570
Partner locus tags
LI147_RS02565LI147_RS02570
Partner old locus tags
LI147_02565LI147_02570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227218100.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI147_RS02570Primary locus identifier stored in the genes table.
Old locus tagLI147_02570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCMK010000003.1Sequence record reported by the local genomic context database.
Genomic interval71 355-73 088 nt1 734 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span69 735-73 088 ntGCF_020560345::NZ_JAJCMK010000003.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020560345::NZ_JAJCMK010000003.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCMK010000003.1All displayed genes belong to this local TCS context.
Neighborhood span69 735-73 088 nt3 354 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 735 nt73 088 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI147_RS02565GCF_020560345#LI147_RS02565
RRunclassified
69 735-71 318 nt · Reverse (-)
LI147_RS02570GCF_020560345#LI147_RS02570
HKClassicCurrent focus
71 355-73 088 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020560345#LI147_RS02570The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1179975
Simplified PFAM architecture for HKOC_1179975
PFAM domain coverage: 188 / 577 aa (32.6%)
1 aa577 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[371-448] | HATPase_c[467-576]
- Domain count: 2
- Matched identifier: HKOC_1179975
- Positioned domains: His_kinase 371-448 ; HATPase_c 467-576
Cluster members and taxonomy
Representative gene: GCF_020560345#LI147_RS02570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_020560345
AssemblyASM2056034v1 · Contighaploid
Genome composition4 076 393 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key