1 Response_reg#1
3-116 aa · 114 aa · 21.6% of protein
Raw token
Response_reg:3:2.55e-24:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI147_RS02565
Response regulator, unclassified
Blautia wexlerae · GCF_020560345
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020560345#LI147_RS02565Stable P2CS identifier used across views.
GenomeGCF_020560345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 527 aa (36.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
435-476 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:435:0.000000113:476:42:423 HTH_AraC#3
491-526 aa · 36 aa · 6.8% of protein
Raw token
HTH_AraC:491:0.000000437:526:36:42- Raw architecture: Response_reg:3:2.55e-24:116:114:111#HTH_AraC:435:0.000000113:476:42:42#HTH_AraC:491:0.000000437:526:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020560345::NZ_JAJCMK010000003.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69735-73088Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI147_02565RefSeq proteinWP_025577751.1
Context group ID
GCF_020560345::NZ_JAJCMK010000003.1::G00024Context members
LI147_RS02565LI147_RS02570
Partner locus tags
LI147_RS02565LI147_RS02570
Partner old locus tags
LI147_02565LI147_02570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025577751.1Primary protein accession used for annex mappings.
UniProt accessionA0A174F8A2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174F8A2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI147_RS02565Primary locus identifier stored in the genes table.
Old locus tagLI147_02565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCMK010000003.1Sequence record reported by the local genomic context database.
Genomic interval69 735-71 318 nt1 584 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span69 735-73 088 ntGCF_020560345::NZ_JAJCMK010000003.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020560345::NZ_JAJCMK010000003.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCMK010000003.1All displayed genes belong to this local TCS context.
Neighborhood span69 735-73 088 nt3 354 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 735 nt73 088 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI147_RS02565GCF_020560345#LI147_RS02565
RRunclassifiedCurrent focus
69 735-71 318 nt · Reverse (-)
LI147_RS02570GCF_020560345#LI147_RS02570
HKClassic
71 355-73 088 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0104670Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0115911
Simplified PFAM architecture for RROC_0115911
PFAM domain coverage: 192 / 527 aa (36.4%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[448-526]
- Domain count: 2
- Matched identifier: RROC_0115911
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; HTH_18 448-526 ; HTH_18 448-526
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0104670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_020560345
AssemblyASM2056034v1 · Contighaploid
Genome composition4 076 393 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key