1 HisKA_3#1
238-305 aa · 68 aa · 15.6% of protein
Raw token
HisKA_3:238:1.86e-22:305:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI129_RS12945
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020559905
ClassHKTypeClassicLength436 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020559905#LI129_RS12945Stable P2CS identifier used across views.
GenomeGCF_020559905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length436 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 436 aa (36.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa436 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-431 aa · 89 aa · 20.4% of protein
Raw token
HATPase_c:343:0.000000000000119:431:109:109- Raw architecture: HisKA_3:238:1.86e-22:305:68:68#HATPase_c:343:0.000000000000119:431:109:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020559905::NZ_JAJCLV010000019.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10565-12542Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI129_12950RefSeq proteinWP_008791331.1
Context group ID
GCF_020559905::NZ_JAJCLV010000019.1::G00008Context members
LI129_RS12945LI129_RS12950
Partner locus tags
LI129_RS12945LI129_RS12950
Partner old locus tags
LI129_12950LI129_12955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008791331.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3AD49Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3AD49_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI129_RS12945Primary locus identifier stored in the genes table.
Old locus tagLI129_12950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCLV010000019.1Sequence record reported by the local genomic context database.
Genomic interval10 565-11 875 nt1 311 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 565-12 542 ntGCF_020559905::NZ_JAJCLV010000019.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020559905::NZ_JAJCLV010000019.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCLV010000019.1All displayed genes belong to this local TCS context.
Neighborhood span10 565-12 542 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 565 nt12 542 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI129_RS12945GCF_020559905#LI129_RS12945
HKClassicCurrent focus
10 565-11 875 nt · Forward (+)
LI129_RS12950GCF_020559905#LI129_RS12950
RRNarL
11 868-12 542 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457945#DWY94_RS15565Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2104920
Simplified PFAM architecture for HKOC_2104920
PFAM domain coverage: 155 / 437 aa (35.5%)
1 aa437 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[239-306] | HATPase_c[345-431]
- Domain count: 2
- Matched identifier: HKOC_2104920
- Positioned domains: HisKA_3 239-306 ; HATPase_c 345-431
Cluster members and taxonomy
Representative gene: GCF_003457945#DWY94_RS15565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020559905
AssemblyASM2055990v1 · Contighaploid
Genome composition4 025 160 bp · 33,0% GCThomasclavelia ramosa
Signal transduction countsGenes 57 · HK 24 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key