1 sCache_like#1
76-139 aa · 64 aa · 11.3% of protein
Raw token
sCache_like:76:0.000000201:139:70:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI129_RS01800
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020559905
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020559905#LI129_RS01800Stable P2CS identifier used across views.
GenomeGCF_020559905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_8HisKAHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage274 / 565 aa (48.5%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation4 items
2 PAS_8#2
242-275 aa · 34 aa · 6.0% of protein
Raw token
PAS_8:242:0.0000276:275:34:653 HisKA#3
339-405 aa · 67 aa · 11.9% of protein
Raw token
HisKA:339:5.43e-19:405:67:644 HATPase_c#4
454-562 aa · 109 aa · 19.3% of protein
Raw token
HATPase_c:454:6.47e-30:562:109:109- Raw architecture: sCache_like:76:0.000000201:139:70:114#PAS_8:242:0.0000276:275:34:65#HisKA:339:5.43e-19:405:67:64#HATPase_c:454:6.47e-30:562:109:109
- Domain description: 1 sCache_like,1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020559905::NZ_JAJCLV010000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31441-33808Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI129_01800RefSeq proteinWP_117561959.1
Context group ID
GCF_020559905::NZ_JAJCLV010000002.1::G00011Context members
LI129_RS01800LI129_RS01805
Partner locus tags
LI129_RS01800LI129_RS01805
Partner old locus tags
LI129_01800LI129_01805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117561959.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI129_RS01800Primary locus identifier stored in the genes table.
Old locus tagLI129_01800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCLV010000002.1Sequence record reported by the local genomic context database.
Genomic interval31 441-33 138 nt1 698 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 441-33 808 ntGCF_020559905::NZ_JAJCLV010000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020559905::NZ_JAJCLV010000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCLV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span31 441-33 808 nt2 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 441 nt33 808 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI129_RS01800GCF_020559905#LI129_RS01800
HKClassicCurrent focus
31 441-33 138 nt · Reverse (-)
LI129_RS01805GCF_020559905#LI129_RS01805
RROmpR
33 125-33 808 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434415#DW242_RS11510Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1235606
Simplified PFAM architecture for HKOC_1235606
PFAM domain coverage: 176 / 565 aa (31.2%)
1 aa565 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[339-405] | HATPase_c[453-561]
- Domain count: 2
- Matched identifier: HKOC_1235606
- Positioned domains: HisKA 339-405 ; HATPase_c 453-561
Cluster members and taxonomy
Representative gene: GCF_003434415#DW242_RS11510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020559905
AssemblyASM2055990v1 · Contighaploid
Genome composition4 025 160 bp · 33,0% GCThomasclavelia ramosa
Signal transduction countsGenes 57 · HK 24 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key