1 HisKA#1
259-326 aa · 68 aa · 14.0% of protein
Raw token
HisKA:259:0.00000000000506:326:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI129_RS03355
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020559905
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_020559905#LI129_RS03355Stable P2CS identifier used across views.
GenomeGCF_020559905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 486 aa (37.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
371-482 aa · 112 aa · 23.0% of protein
Raw token
HATPase_c:371:1.47e-28:482:112:109- Raw architecture: HisKA:259:0.00000000000506:326:68:64#HATPase_c:371:1.47e-28:482:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_020559905::NZ_JAJCLV010000003.1::G00022
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span138263-143837Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI129_03360RefSeq proteinWP_008792566.1
Context group ID
GCF_020559905::NZ_JAJCLV010000003.1::G00022Context members
LI129_RS03345LI129_RS03350LI129_RS03355LI129_RS03360
Partner locus tags
LI129_RS03345LI129_RS03350LI129_RS03355LI129_RS03360
Partner old locus tags
LI129_03350LI129_03355LI129_03360LI129_03365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008792566.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q3A486Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q3A486_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI129_RS03355Primary locus identifier stored in the genes table.
Old locus tagLI129_03360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCLV010000003.1Sequence record reported by the local genomic context database.
Genomic interval141 701-143 161 nt1 461 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span138 263-143 837 ntGCF_020559905::NZ_JAJCLV010000003.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020559905::NZ_JAJCLV010000003.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCLV010000003.1All displayed genes belong to this local TCS context.
Neighborhood span138 263-143 837 nt5 575 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 263 nt143 837 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
LI129_RS03345GCF_020559905#LI129_RS03345
HKClassic
138 263-140 953 nt · Forward (+)
LI129_RS03350GCF_020559905#LI129_RS03350
RROmpR
140 946-141 656 nt · Forward (+)
LI129_RS03355GCF_020559905#LI129_RS03355
HKClassicCurrent focus
141 701-143 161 nt · Forward (+)
LI129_RS03360GCF_020559905#LI129_RS03360
RROmpR
143 154-143 837 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434415#DW242_RS02710Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1569236
Simplified PFAM architecture for HKOC_1569236
PFAM domain coverage: 282 / 486 aa (58.0%)
1 aa486 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[13-115] | HisKA[259-326] | HATPase_c[371-481]
- Domain count: 3
- Matched identifier: HKOC_1569236
- Positioned domains: DUF4118 13-115 ; HisKA 259-326 ; HATPase_c 371-481
Cluster members and taxonomy
Representative gene: GCF_003434415#DW242_RS02710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020559905
AssemblyASM2055990v1 · Contighaploid
Genome composition4 025 160 bp · 33,0% GCThomasclavelia ramosa
Signal transduction countsGenes 57 · HK 24 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key