1 Response_reg#1
7-123 aa · 117 aa · 46.2% of protein
Raw token
Response_reg:7:0.0000000763:123:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI129_RS02830
Response regulator Spo0A family
Thomasclavelia ramosa · GCF_020559905
ClassRRTypeSpo0ALength253 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020559905#LI129_RS02830Stable P2CS identifier used across views.
GenomeGCF_020559905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 253 aa (86.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
146-246 aa · 101 aa · 39.9% of protein
Raw token
Spo0A_C:146:1.16e-41:246:104:104- Raw architecture: Response_reg:7:0.0000000763:123:117:111#Spo0A_C:146:1.16e-41:246:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020559905::NZ_JAJCLV010000003.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span25404-26165Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI129_02835RefSeq proteinWP_003535411.1
Context group ID
GCF_020559905::NZ_JAJCLV010000003.1::G00020Context members
LI129_RS02830
Partner locus tags
LI129_RS02830
Partner old locus tags
LI129_02835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535411.1Primary protein accession used for annex mappings.
UniProt accessionB0N1X1Primary UniProt accession resolved in the annex database.
UniProt IDB0N1X1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI129_RS02830Primary locus identifier stored in the genes table.
Old locus tagLI129_02835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCLV010000003.1Sequence record reported by the local genomic context database.
Genomic interval25 404-26 165 nt762 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 404-26 165 ntGCF_020559905::NZ_JAJCLV010000003.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020559905::NZ_JAJCLV010000003.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCLV010000003.1All displayed genes belong to this local TCS context.
Neighborhood span25 404-26 165 nt762 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 404 nt26 165 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LI129_RS02830GCF_020559905#LI129_RS02830
RRSpo0ACurrent focus
25 404-26 165 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS02930Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0695358
Simplified PFAM architecture for RROC_0695358
PFAM domain coverage: 213 / 253 aa (84.2%)
1 aa253 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[9-120] | Spo0A_C[146-246]
- Domain count: 2
- Matched identifier: RROC_0695358
- Positioned domains: Response_reg 9-120 ; Response_reg 9-120 ; Spo0A_C 146-246 ; Spo0A_C 146-246
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS02930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020559905
AssemblyASM2055990v1 · Contighaploid
Genome composition4 025 160 bp · 33,0% GCThomasclavelia ramosa
Signal transduction countsGenes 57 · HK 24 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key