1 HAMP#1
156-225 aa · 70 aa · 15.8% of protein
Raw token
HAMP:156:0.00000122:225:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI119_RS17290
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020559885
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020559885#LI119_RS17290Stable P2CS identifier used across views.
GenomeGCF_020559885Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 442 aa (50.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa442 aa
Domain-by-domain annotation3 items
2 HisKA#2
239-297 aa · 59 aa · 13.3% of protein
Raw token
HisKA:239:0.00000000144:297:59:643 HATPase_c#3
348-440 aa · 93 aa · 21.0% of protein
Raw token
HATPase_c:348:0.00000576:440:110:109- Raw architecture: HAMP:156:0.00000122:225:70:69#HisKA:239:0.00000000144:297:59:64#HATPase_c:348:0.00000576:440:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020559885::NZ_JAJCLX010000005.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117584-119606Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI119_05890RefSeq proteinWP_003535084.1
Context group ID
GCF_020559885::NZ_JAJCLX010000005.1::G00023Context members
LI119_RS05890LI119_RS17290
Partner locus tags
LI119_RS05890LI119_RS17290
Partner old locus tags
LI119_05885LI119_05890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535084.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q2X2X4Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q2X2X4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI119_RS17290Primary locus identifier stored in the genes table.
Old locus tagLI119_05890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCLX010000005.1Sequence record reported by the local genomic context database.
Genomic interval118 278-119 606 nt1 329 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span117 584-119 606 ntGCF_020559885::NZ_JAJCLX010000005.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020559885::NZ_JAJCLX010000005.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCLX010000005.1All displayed genes belong to this local TCS context.
Neighborhood span117 584-119 606 nt2 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 584 nt119 606 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI119_RS05890GCF_020559885#LI119_RS05890
RROmpR
117 584-118 285 nt · Forward (+)
LI119_RS17290GCF_020559885#LI119_RS17290
HKClassicCurrent focus
118 278-119 606 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS02020Use this link to inspect the representative gene detail.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2051464
Simplified PFAM architecture for HKOC_2051464
PFAM domain coverage: 58 / 442 aa (13.1%)
1 aa442 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[239-296]
- Domain count: 1
- Matched identifier: HKOC_2051464
- Positioned domains: HisKA 239-296
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS02020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020559885
AssemblyASM2055988v1 · Contighaploid
Genome composition3 473 843 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 49 · HK 23 · RR 26CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key