1 HisKA#1
240-303 aa · 64 aa · 14.4% of protein
Raw token
HisKA:240:0.0000000049:303:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI119_RS03535
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020559885
ClassHKTypeClassicLength445 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020559885#LI119_RS03535Stable P2CS identifier used across views.
GenomeGCF_020559885Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length445 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 445 aa (35.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa445 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
347-441 aa · 95 aa · 21.3% of protein
Raw token
HATPase_c:347:0.00000000000648:441:104:109- Raw architecture: HisKA:240:0.0000000049:303:64:64#HATPase_c:347:0.00000000000648:441:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020559885::NZ_JAJCLX010000003.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45609-47599Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI119_03530RefSeq proteinWP_009009691.1
Context group ID
GCF_020559885::NZ_JAJCLX010000003.1::G00012Context members
LI119_RS03530LI119_RS03535
Partner locus tags
LI119_RS03530LI119_RS03535
Partner old locus tags
LI119_03525LI119_03530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009009691.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI119_RS03535Primary locus identifier stored in the genes table.
Old locus tagLI119_03530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCLX010000003.1Sequence record reported by the local genomic context database.
Genomic interval46 262-47 599 nt1 338 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 609-47 599 ntGCF_020559885::NZ_JAJCLX010000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020559885::NZ_JAJCLX010000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCLX010000003.1All displayed genes belong to this local TCS context.
Neighborhood span45 609-47 599 nt1 991 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 609 nt47 599 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI119_RS03530GCF_020559885#LI119_RS03530
RROmpR
45 609-46 262 nt · Forward (+)
LI119_RS03535GCF_020559885#LI119_RS03535
HKClassicCurrent focus
46 262-47 599 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019052555#KTQ95_RS01120Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2026578
Simplified PFAM architecture for HKOC_2026578
PFAM domain coverage: 157 / 445 aa (35.3%)
1 aa445 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[240-303] | HATPase_c[348-440]
- Domain count: 2
- Matched identifier: HKOC_2026578
- Positioned domains: HisKA 240-303 ; HATPase_c 348-440
Cluster members and taxonomy
Representative gene: GCF_019052555#KTQ95_RS01120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020559885
AssemblyASM2055988v1 · Contighaploid
Genome composition3 473 843 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 49 · HK 23 · RR 26CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key