1 KdpD#1
23-232 aa · 210 aa · 23.4% of protein
Raw token
KdpD:23:3.41e-133:232:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI119_RS04960
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020559885
ClassHKTypeClassicLength896 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_020559885#LI119_RS04960Stable P2CS identifier used across views.
GenomeGCF_020559885Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length896 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 896 aa (43.5%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa896 aa
Domain-by-domain annotation3 items
2 HisKA#2
668-735 aa · 68 aa · 7.6% of protein
Raw token
HisKA:668:0.00000000000238:735:68:643 HATPase_c#3
780-891 aa · 112 aa · 12.5% of protein
Raw token
HATPase_c:780:2.53e-29:891:112:109- Raw architecture: KdpD:23:3.41e-133:232:210:210#HisKA:668:0.00000000000238:735:68:64#HATPase_c:780:2.53e-29:891:112:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_020559885::NZ_JAJCLX010000004.1::G00021
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span138441-144015Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI119_04955RefSeq proteinWP_227140977.1
Context group ID
GCF_020559885::NZ_JAJCLX010000004.1::G00021Context members
LI119_RS04960LI119_RS04965LI119_RS04970LI119_RS04975
Partner locus tags
LI119_RS04960LI119_RS04965LI119_RS04970LI119_RS04975
Partner old locus tags
LI119_04955LI119_04960LI119_04965LI119_04970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227140977.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI119_RS04960Primary locus identifier stored in the genes table.
Old locus tagLI119_04955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCLX010000004.1Sequence record reported by the local genomic context database.
Genomic interval138 441-141 131 nt2 691 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span138 441-144 015 ntGCF_020559885::NZ_JAJCLX010000004.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020559885::NZ_JAJCLX010000004.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCLX010000004.1All displayed genes belong to this local TCS context.
Neighborhood span138 441-144 015 nt5 575 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 441 nt144 015 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
LI119_RS04960GCF_020559885#LI119_RS04960
HKClassicCurrent focus
138 441-141 131 nt · Forward (+)
LI119_RS04965GCF_020559885#LI119_RS04965
RROmpR
141 124-141 834 nt · Forward (+)
LI119_RS04970GCF_020559885#LI119_RS04970
HKClassic
141 879-143 339 nt · Forward (+)
LI119_RS04975GCF_020559885#LI119_RS04975
RROmpR
143 332-144 015 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020559845#LI118_RS04700Use this link to inspect the representative gene detail.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0414584
Simplified PFAM architecture for HKOC_0414584
PFAM domain coverage: 495 / 896 aa (55.2%)
1 aa896 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[23-232] | DUF4118[399-504] | HisKA[668-735] | HATPase_c[780-890]
- Domain count: 4
- Matched identifier: HKOC_0414584
- Positioned domains: KdpD 23-232 ; DUF4118 399-504 ; HisKA 668-735 ; HATPase_c 780-890
Cluster members and taxonomy
Representative gene: GCF_020559845#LI118_RS04700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020559885
AssemblyASM2055988v1 · Contighaploid
Genome composition3 473 843 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 49 · HK 23 · RR 26CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key