1 Response_reg#1
5-113 aa · 109 aa · 30.9% of protein
Raw token
Response_reg:5:5.66e-29:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI000_RS01245
Response regulator, CheB family
Agathobacter rectalis · GCF_020557695
ClassRRTypeCheBLength353 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557695#LI000_RS01245Stable P2CS identifier used across views.
GenomeGCF_020557695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length353 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage290 / 353 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 CheB_methylest#2
166-346 aa · 181 aa · 51.3% of protein
Raw token
CheB_methylest:166:2.24e-77:346:181:177- Raw architecture: Response_reg:5:5.66e-29:113:109:111#CheB_methylest:166:2.24e-77:346:181:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557695::NZ_JAJCJR010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span275875-279058Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI000_01250RefSeq proteinWP_012742626.1
Context group ID
GCF_020557695::NZ_JAJCJR010000001.1::G00005Context members
LI000_RS01245LI000_RS01250
Partner locus tags
LI000_RS01245LI000_RS01250
Partner old locus tags
LI000_01250LI000_01255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012742626.1Primary protein accession used for annex mappings.
UniProt accessionC4ZA87Primary UniProt accession resolved in the annex database.
UniProt IDC4ZA87_AGARVDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI000_RS01245Primary locus identifier stored in the genes table.
Old locus tagLI000_01250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJR010000001.1Sequence record reported by the local genomic context database.
Genomic interval275 875-276 936 nt1 062 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span275 875-279 058 ntGCF_020557695::NZ_JAJCJR010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557695::NZ_JAJCJR010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJR010000001.1All displayed genes belong to this local TCS context.
Neighborhood span275 875-279 058 nt3 184 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
275 875 nt279 058 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI000_RS01245GCF_020557695#LI000_RS01245
RRCheBCurrent focus
275 875-276 936 nt · Forward (+)
LI000_RS01250GCF_020557695#LI000_RS01250
HKCheA
276 938-279 058 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS08010Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0473096
Simplified PFAM architecture for RROC_0473096
PFAM domain coverage: 287 / 353 aa (81.3%)
1 aa353 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[5-110] | CheB_methylest[166-346]
- Domain count: 2
- Matched identifier: RROC_0473096
- Positioned domains: Response_reg 5-110 ; Response_reg 5-110 ; CheB_methylest 166-346 ; CheB_methylest 166-346
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS08010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557695
AssemblyASM2055769v1 · Contighaploid
Genome composition3 471 285 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 86 · HK 36 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key