1 Response_reg#1
4-107 aa · 104 aa · 43.2% of protein
Raw token
Response_reg:4:1.09e-17:107:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI000_RS00720
Response regulator LytTR family
Agathobacter rectalis · GCF_020557695
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020557695#LI000_RS00720Stable P2CS identifier used across views.
GenomeGCF_020557695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 241 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
145-234 aa · 90 aa · 37.3% of protein
Raw token
LytTR:145:1.19e-17:234:95:98- Raw architecture: Response_reg:4:1.09e-17:107:106:111#LytTR:145:1.19e-17:234:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020557695::NZ_JAJCJR010000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span153275-154000Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI000_00730RefSeq proteinWP_015569364.1
Context group ID
GCF_020557695::NZ_JAJCJR010000001.1::G00004Context members
LI000_RS00720
Partner locus tags
LI000_RS00720
Partner old locus tags
LI000_00730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015569364.1Primary protein accession used for annex mappings.
UniProt accessionA0A173WFV4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173WFV4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI000_RS00720Primary locus identifier stored in the genes table.
Old locus tagLI000_00730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJR010000001.1Sequence record reported by the local genomic context database.
Genomic interval153 275-154 000 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span153 275-154 000 ntGCF_020557695::NZ_JAJCJR010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557695::NZ_JAJCJR010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJR010000001.1All displayed genes belong to this local TCS context.
Neighborhood span153 275-154 000 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 275 nt154 000 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LI000_RS00720GCF_020557695#LI000_RS00720
RRLytTRCurrent focus
153 275-154 000 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS14070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862964
Simplified PFAM architecture for RROC_0862964
PFAM domain coverage: 195 / 241 aa (80.9%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[145-233]
- Domain count: 2
- Matched identifier: RROC_0862964
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; LytTR 145-233 ; LytTR 145-233
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS14070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557695
AssemblyASM2055769v1 · Contighaploid
Genome composition3 471 285 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 86 · HK 36 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key