1 HAMP#1
138-202 aa · 65 aa · 14.6% of protein
Raw token
HAMP:138:0.00000000406:202:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ84_RS01810
Histidine kinase, Classic
Roseburia faecis · GCF_020557615
ClassHKTypeClassicLength444 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557615#LIZ84_RS01810Stable P2CS identifier used across views.
GenomeGCF_020557615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length444 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 444 aa (53.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
219-288 aa · 70 aa · 15.8% of protein
Raw token
HisKA:219:0.000000000735:288:70:643 HATPase_c#3
337-439 aa · 103 aa · 23.2% of protein
Raw token
HATPase_c:337:3.63e-23:439:104:109- Raw architecture: HAMP:138:0.00000000406:202:65:69#HisKA:219:0.000000000735:288:70:64#HATPase_c:337:3.63e-23:439:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557615::NZ_JAJCJO010000002.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94397-96393Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ84_01825RefSeq proteinWP_215659285.1
Context group ID
GCF_020557615::NZ_JAJCJO010000002.1::G00024Context members
LIZ84_RS01805LIZ84_RS01810
Partner locus tags
LIZ84_RS01805LIZ84_RS01810
Partner old locus tags
LIZ84_01820LIZ84_01825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215659285.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ84_RS01810Primary locus identifier stored in the genes table.
Old locus tagLIZ84_01825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJO010000002.1Sequence record reported by the local genomic context database.
Genomic interval95 059-96 393 nt1 335 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span94 397-96 393 ntGCF_020557615::NZ_JAJCJO010000002.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557615::NZ_JAJCJO010000002.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJO010000002.1All displayed genes belong to this local TCS context.
Neighborhood span94 397-96 393 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 397 nt96 393 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ84_RS01805GCF_020557615#LIZ84_RS01805
RROmpR
94 397-95 071 nt · Forward (+)
LIZ84_RS01810GCF_020557615#LIZ84_RS01810
HKClassicCurrent focus
95 059-96 393 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018783905#GPK60_RS08410Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2036430
Simplified PFAM architecture for HKOC_2036430
PFAM domain coverage: 216 / 444 aa (48.6%)
1 aa444 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[156-202] | HisKA[220-287] | HATPase_c[337-437]
- Domain count: 3
- Matched identifier: HKOC_2036430
- Positioned domains: HAMP 156-202 ; HisKA 220-287 ; HATPase_c 337-437
Cluster members and taxonomy
Representative gene: GCF_018783905#GPK60_RS08410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_020557615
AssemblyASM2055761v1 · Contighaploid
Genome composition3 609 441 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key