1 Response_reg#1
2-76 aa · 75 aa · 37.9% of protein
Raw token
Response_reg:2:5.73e-20:76:75:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ84_RS00430
Response regulator, unclassified
Roseburia faecis · GCF_020557615
ClassRRTypeunclassifiedLength198 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020557615#LIZ84_RS00430Stable P2CS identifier used across views.
GenomeGCF_020557615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length198 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage75 / 198 aa (37.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:2:5.73e-20:76:75:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020557615::NZ_JAJCJO010000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span92160-92756Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ84_00435RefSeq proteinWP_195491381.1
Context group ID
GCF_020557615::NZ_JAJCJO010000001.1::G00003Context members
LIZ84_RS00430
Partner locus tags
LIZ84_RS00430
Partner old locus tags
LIZ84_00435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195491381.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ84_RS00430Primary locus identifier stored in the genes table.
Old locus tagLIZ84_00435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJO010000001.1Sequence record reported by the local genomic context database.
Genomic interval92 160-92 756 nt597 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span92 160-92 756 ntGCF_020557615::NZ_JAJCJO010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557615::NZ_JAJCJO010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span92 160-92 756 nt597 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 160 nt92 756 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIZ84_RS00430GCF_020557615#LIZ84_RS00430
RRunclassifiedCurrent focus
92 160-92 756 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015556245#I2F81_RS11355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2150441
Simplified PFAM architecture for RROC_2150441
PFAM domain coverage: 83 / 198 aa (41.9%)
1 aa198 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-84]
- Domain count: 1
- Matched identifier: RROC_2150441
- Positioned domains: Response_reg 2-84
Cluster members and taxonomy
Representative gene: GCF_015556245#I2F81_RS11355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_020557615
AssemblyASM2055761v1 · Contighaploid
Genome composition3 609 441 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key