1 Response_reg#1
4-108 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:4:1.4e-18:108:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS05565
Response regulator LytTR family
Agathobacter rectalis · GCF_020557395
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020557395#LIZ56_RS05565Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 241 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
140-234 aa · 95 aa · 39.4% of protein
Raw token
LytTR:140:0.0000000000000119:234:100:98- Raw architecture: Response_reg:4:1.4e-18:108:107:111#LytTR:140:0.0000000000000119:234:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020557395::NZ_JAJCJK010000006.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span55290-56015Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_05560RefSeq proteinWP_306780749.1
Context group ID
GCF_020557395::NZ_JAJCJK010000006.1::G00047Context members
LIZ56_RS05565
Partner locus tags
LIZ56_RS05565
Partner old locus tags
LIZ56_05560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780749.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UIC7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UIC7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS05565Primary locus identifier stored in the genes table.
Old locus tagLIZ56_05560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000006.1Sequence record reported by the local genomic context database.
Genomic interval55 290-56 015 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 290-56 015 ntGCF_020557395::NZ_JAJCJK010000006.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000006.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000006.1All displayed genes belong to this local TCS context.
Neighborhood span55 290-56 015 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 290 nt56 015 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIZ56_RS05565GCF_020557395#LIZ56_RS05565
RRLytTRCurrent focus
55 290-56 015 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS05565The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0872680
Simplified PFAM architecture for RROC_0872680
PFAM domain coverage: 198 / 241 aa (82.2%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[142-233]
- Domain count: 2
- Matched identifier: RROC_0872680
- Positioned domains: Response_reg 4-109 ; LytTR 142-233
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS05565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key