1 HisKA#1
325-391 aa · 67 aa · 9.4% of protein
Raw token
HisKA:325:8.61e-18:391:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ62_RS04340
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_020554765
ClassHKTypeHybridLength713 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020554765#LIZ62_RS04340Stable P2CS identifier used across views.
GenomeGCF_020554765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length713 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 713 aa (42.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa713 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
438-556 aa · 119 aa · 16.7% of protein
Raw token
HATPase_c:438:2.05e-28:556:119:1093 Response_reg#3
584-700 aa · 117 aa · 16.4% of protein
Raw token
Response_reg:584:1.17e-26:700:117:111- Raw architecture: HisKA:325:8.61e-18:391:67:64#HATPase_c:438:2.05e-28:556:119:109#Response_reg:584:1.17e-26:700:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020554765::NZ_JAJCHX010000003.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span57313-59454Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ62_04340RefSeq proteinWP_227093727.1
Context group ID
GCF_020554765::NZ_JAJCHX010000003.1::G00038Context members
LIZ62_RS04340
Partner locus tags
LIZ62_RS04340
Partner old locus tags
LIZ62_04340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227093727.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ62_RS04340Primary locus identifier stored in the genes table.
Old locus tagLIZ62_04340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCHX010000003.1Sequence record reported by the local genomic context database.
Genomic interval57 313-59 454 nt2 142 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 313-59 454 ntGCF_020554765::NZ_JAJCHX010000003.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020554765::NZ_JAJCHX010000003.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCHX010000003.1All displayed genes belong to this local TCS context.
Neighborhood span57 313-59 454 nt2 142 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 313 nt59 454 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIZ62_RS04340GCF_020554765#LIZ62_RS04340
HKHybridCurrent focus
57 313-59 454 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020554765#LIZ62_RS04340The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0746489
Simplified PFAM architecture for HKOC_0746489
PFAM domain coverage: 301 / 713 aa (42.2%)
1 aa713 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[325-391] | HATPase_c[438-555] | Response_reg[584-699]
- Domain count: 3
- Matched identifier: HKOC_0746489
- Positioned domains: HisKA 325-391 ; HATPase_c 438-555 ; Response_reg 584-699
Cluster members and taxonomy
Representative gene: GCF_020554765#LIZ62_RS04340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020554765
AssemblyASM2055476v1 · Contighaploid
Genome composition3 777 977 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 90 · HK 44 · RR 44CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key