1 Response_reg#1
5-66 aa · 62 aa · 93.9% of protein
Raw token
Response_reg:5:0.000000000000117:66:62:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ43_RS10690
Response regulator, CheY family
Bifidobacterium breve · GCF_020539185
ClassRRTypeCheYLength66 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020539185#LIQ43_RS10690Stable P2CS identifier used across views.
GenomeGCF_020539185Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length66 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage62 / 66 aa (93.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa66 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.000000000000117:66:62:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020539185::NZ_JAJBPS010000167.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-198Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ43_10690RefSeq proteinWP_226792605.1
Context group ID
GCF_020539185::NZ_JAJBPS010000167.1::G00007Context members
LIQ43_RS10690
Partner locus tags
LIQ43_RS10690
Partner old locus tags
LIQ43_10690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226792605.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ43_RS10690Primary locus identifier stored in the genes table.
Old locus tagLIQ43_10690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPS010000167.1Sequence record reported by the local genomic context database.
Genomic interval1-198 nt198 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-198 ntGCF_020539185::NZ_JAJBPS010000167.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020539185::NZ_JAJBPS010000167.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPS010000167.1All displayed genes belong to this local TCS context.
Neighborhood span1-198 nt198 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt198 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ43_RS10690GCF_020539185#LIQ43_RS10690
RRCheYCurrent focus
1-198 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS11615Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0078567
Simplified PFAM architecture for RROC_0078567
PFAM domain coverage: 195 / 547 aa (35.6%)
1 aa547 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[8-120] | HTH_AraC[451-492] | HTH_AraC[503-542]
- Domain count: 3
- Matched identifier: RROC_0078567
- Positioned domains: Response_reg 8-120 ; HTH_AraC 451-492 ; HTH_AraC 503-542
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS11615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_020539185
AssemblyASM2053918v1 · Contighaploid
Genome composition2 382 550 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 23 · HK 8 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key