1 Response_reg#1
4-113 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:4:4.08e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ95_RS09620
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_020538885
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538885#LIQ95_RS09620Stable P2CS identifier used across views.
GenomeGCF_020538885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 230 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-226 aa · 73 aa · 31.7% of protein
Raw token
Trans_reg_C:154:4.14e-33:226:73:77- Raw architecture: Response_reg:4:4.08e-39:113:111:111#Trans_reg_C:154:4.14e-33:226:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538885::NZ_JAJBPJ010000010.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27118-28733Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ95_09620RefSeq proteinWP_120081437.1
Context group ID
GCF_020538885::NZ_JAJBPJ010000010.1::G00006Context members
LIQ95_RS09615LIQ95_RS09620
Partner locus tags
LIQ95_RS09615LIQ95_RS09620
Partner old locus tags
LIQ95_09615LIQ95_09620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_120081437.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35XVI3Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35XVI3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ95_RS09620Primary locus identifier stored in the genes table.
Old locus tagLIQ95_09620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPJ010000010.1Sequence record reported by the local genomic context database.
Genomic interval28 041-28 733 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 118-28 733 ntGCF_020538885::NZ_JAJBPJ010000010.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538885::NZ_JAJBPJ010000010.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPJ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span27 118-28 733 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 118 nt28 733 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ95_RS09615GCF_020538885#LIQ95_RS09615
HKClassic
27 118-28 035 nt · Reverse (-)
LIQ95_RS09620GCF_020538885#LIQ95_RS09620
RROmpRCurrent focus
28 041-28 733 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003603005#DWY76_RS11895Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1211619
Simplified PFAM architecture for RROC_1211619
PFAM domain coverage: 183 / 230 aa (79.6%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[153-226]
- Domain count: 2
- Matched identifier: RROC_1211619
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 153-226 ; Trans_reg_C 153-226
Cluster members and taxonomy
Representative gene: GCF_003603005#DWY76_RS11895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538885
AssemblyASM2053888v1 · Contighaploid
Genome composition3 863 035 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 48 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key