1 HisKA#1
85-141 aa · 57 aa · 19.2% of protein
Raw token
HisKA:85:0.00000000000312:141:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ95_RS00980
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_020538885
ClassHKTypeClassicLength297 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538885#LIQ95_RS00980Stable P2CS identifier used across views.
GenomeGCF_020538885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length297 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 297 aa (49.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa297 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-286 aa · 90 aa · 30.3% of protein
Raw token
HATPase_c:197:1.16e-19:286:95:109- Raw architecture: HisKA:85:0.00000000000312:141:57:64#HATPase_c:197:1.16e-19:286:95:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538885::NZ_JAJBPJ010000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span184083-184976Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ95_00980RefSeq proteinWP_173867662.1
Context group ID
GCF_020538885::NZ_JAJBPJ010000001.1::G00002Context members
LIQ95_RS00980
Partner locus tags
LIQ95_RS00980
Partner old locus tags
LIQ95_00980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173867662.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1B905Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1B905_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ95_RS00980Primary locus identifier stored in the genes table.
Old locus tagLIQ95_00980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval184 083-184 976 nt894 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span184 083-184 976 ntGCF_020538885::NZ_JAJBPJ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538885::NZ_JAJBPJ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span184 083-184 976 nt894 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 083 nt184 976 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ95_RS00980GCF_020538885#LIQ95_RS00980
HKClassicCurrent focus
184 083-184 976 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303255#G4975_RS15430Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2890422
Simplified PFAM architecture for HKOC_2890422
PFAM domain coverage: 143 / 297 aa (48.1%)
1 aa297 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-143] | HATPase_c[197-282]
- Domain count: 2
- Matched identifier: HKOC_2890422
- Positioned domains: HisKA 87-143 ; HATPase_c 197-282
Cluster members and taxonomy
Representative gene: GCF_013303255#G4975_RS15430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538885
AssemblyASM2053888v1 · Contighaploid
Genome composition3 863 035 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 48 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key