1 Response_reg#1
4-113 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:4:7.92e-22:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ06_RS15250
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_020538415
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538415#LIQ06_RS15250Stable P2CS identifier used across views.
GenomeGCF_020538415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 236 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-228 aa · 92 aa · 39.0% of protein
Raw token
LytTR:137:1.67e-19:228:97:98- Raw architecture: Response_reg:4:7.92e-22:113:113:111#LytTR:137:1.67e-19:228:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538415::NZ_JAJBOJ010000028.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span43225-43935Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ06_15245RefSeq proteinWP_173879621.1
Context group ID
GCF_020538415::NZ_JAJBOJ010000028.1::G00029Context members
LIQ06_RS15250
Partner locus tags
LIQ06_RS15250
Partner old locus tags
LIQ06_15245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173879621.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1AZF2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1AZF2_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ06_RS15250Primary locus identifier stored in the genes table.
Old locus tagLIQ06_15245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOJ010000028.1Sequence record reported by the local genomic context database.
Genomic interval43 225-43 935 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 225-43 935 ntGCF_020538415::NZ_JAJBOJ010000028.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538415::NZ_JAJBOJ010000028.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOJ010000028.1All displayed genes belong to this local TCS context.
Neighborhood span43 225-43 935 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 225 nt43 935 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ06_RS15250GCF_020538415#LIQ06_RS15250
RRLytTRCurrent focus
43 225-43 935 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299885#G4418_RS13680Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0999159
Simplified PFAM architecture for RROC_0999159
PFAM domain coverage: 201 / 236 aa (85.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_0999159
- Positioned domains: Response_reg 4-113 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_013299885#G4418_RS13680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538415
AssemblyASM2053841v1 · Contighaploid
Genome composition3 861 418 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key