1 HAMP#1
144-213 aa · 70 aa · 15.3% of protein
Raw token
HAMP:144:0.0000000000198:213:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ06_RS01370
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_020538415
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538415#LIQ06_RS01370Stable P2CS identifier used across views.
GenomeGCF_020538415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 457 aa (52.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-302 aa · 65 aa · 14.2% of protein
Raw token
HisKA:238:0.000000000148:302:65:643 HATPase_c#3
348-451 aa · 104 aa · 22.8% of protein
Raw token
HATPase_c:348:3.32e-18:451:109:109- Raw architecture: HAMP:144:0.0000000000198:213:70:69#HisKA:238:0.000000000148:302:65:64#HATPase_c:348:3.32e-18:451:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538415::NZ_JAJBOJ010000002.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20073-22101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ06_01370RefSeq proteinWP_009243777.1
Context group ID
GCF_020538415::NZ_JAJBOJ010000002.1::G00017Context members
LIQ06_RS01370LIQ06_RS01375
Partner locus tags
LIQ06_RS01370LIQ06_RS01375
Partner old locus tags
LIQ06_01370LIQ06_01375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009243777.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NW67Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NW67_MEDG5Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ06_RS01370Primary locus identifier stored in the genes table.
Old locus tagLIQ06_01370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOJ010000002.1Sequence record reported by the local genomic context database.
Genomic interval20 073-21 446 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 073-22 101 ntGCF_020538415::NZ_JAJBOJ010000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538415::NZ_JAJBOJ010000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOJ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span20 073-22 101 nt2 029 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 073 nt22 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ06_RS01370GCF_020538415#LIQ06_RS01370
HKClassicCurrent focus
20 073-21 446 nt · Reverse (-)
LIQ06_RS01375GCF_020538415#LIQ06_RS01375
RROmpR
21 430-22 101 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS02010Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1874327
Simplified PFAM architecture for HKOC_1874327
PFAM domain coverage: 216 / 457 aa (47.3%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-212] | HisKA[239-302] | HATPase_c[349-450]
- Domain count: 3
- Matched identifier: HKOC_1874327
- Positioned domains: HAMP 163-212 ; HisKA 239-302 ; HATPase_c 349-450
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS02010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538415
AssemblyASM2053841v1 · Contighaploid
Genome composition3 861 418 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key