1 Response_reg#1
4-113 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:4:2.15e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ06_RS15120
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_020538415
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538415#LIQ06_RS15120Stable P2CS identifier used across views.
GenomeGCF_020538415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 220 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-218 aa · 71 aa · 32.3% of protein
Raw token
Trans_reg_C:148:1.21e-22:218:77:77- Raw architecture: Response_reg:4:2.15e-33:113:111:111#Trans_reg_C:148:1.21e-22:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538415::NZ_JAJBOJ010000028.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11072-13097Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ06_15115RefSeq proteinWP_118445453.1
Context group ID
GCF_020538415::NZ_JAJBOJ010000028.1::G00028Context members
LIQ06_RS15120LIQ06_RS15125
Partner locus tags
LIQ06_RS15120LIQ06_RS15125
Partner old locus tags
LIQ06_15115LIQ06_15120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118445453.1Primary protein accession used for annex mappings.
UniProt accessionA0A415RZR7Primary UniProt accession resolved in the annex database.
UniProt IDA0A415RZR7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ06_RS15120Primary locus identifier stored in the genes table.
Old locus tagLIQ06_15115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOJ010000028.1Sequence record reported by the local genomic context database.
Genomic interval11 072-11 734 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 072-13 097 ntGCF_020538415::NZ_JAJBOJ010000028.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538415::NZ_JAJBOJ010000028.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOJ010000028.1All displayed genes belong to this local TCS context.
Neighborhood span11 072-13 097 nt2 026 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 072 nt13 097 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ06_RS15120GCF_020538415#LIQ06_RS15120
RROmpRCurrent focus
11 072-11 734 nt · Forward (+)
LIQ06_RS15125GCF_020538415#LIQ06_RS15125
HKClassic
11 724-13 097 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003475365#DWZ50_RS19050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1732498
Simplified PFAM architecture for RROC_1732498
PFAM domain coverage: 179 / 220 aa (81.4%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-217]
- Domain count: 2
- Matched identifier: RROC_1732498
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-217 ; Trans_reg_C 148-217
Cluster members and taxonomy
Representative gene: GCF_003475365#DWZ50_RS19050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538415
AssemblyASM2053841v1 · Contighaploid
Genome composition3 861 418 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key