1 Response_reg#1
4-108 aa · 105 aa · 43.8% of protein
Raw token
Response_reg:4:3.72e-19:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ06_RS14945
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_020538415
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538415#LIQ06_RS14945Stable P2CS identifier used across views.
GenomeGCF_020538415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 240 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-232 aa · 96 aa · 40.0% of protein
Raw token
LytTR:137:3.96e-18:232:102:98- Raw architecture: Response_reg:4:3.72e-19:108:108:111#LytTR:137:3.96e-18:232:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538415::NZ_JAJBOJ010000027.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14135-14857Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ06_14940RefSeq proteinWP_004842789.1
Context group ID
GCF_020538415::NZ_JAJBOJ010000027.1::G00027Context members
LIQ06_RS14945
Partner locus tags
LIQ06_RS14945
Partner old locus tags
LIQ06_14940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004842789.1Primary protein accession used for annex mappings.
UniProt accessionA7B2M4Primary UniProt accession resolved in the annex database.
UniProt IDA7B2M4_MEDG7Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ06_RS14945Primary locus identifier stored in the genes table.
Old locus tagLIQ06_14940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOJ010000027.1Sequence record reported by the local genomic context database.
Genomic interval14 135-14 857 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 135-14 857 ntGCF_020538415::NZ_JAJBOJ010000027.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538415::NZ_JAJBOJ010000027.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOJ010000027.1All displayed genes belong to this local TCS context.
Neighborhood span14 135-14 857 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 135 nt14 857 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ06_RS14945GCF_020538415#LIQ06_RS14945
RRLytTRCurrent focus
14 135-14 857 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS07855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882288
Simplified PFAM architecture for RROC_0882288
PFAM domain coverage: 206 / 240 aa (85.8%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[138-231]
- Domain count: 2
- Matched identifier: RROC_0882288
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 138-231 ; LytTR 138-231
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS07855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538415
AssemblyASM2053841v1 · Contighaploid
Genome composition3 861 418 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key