1 Response_reg#1
7-105 aa · 99 aa · 28.3% of protein
Raw token
Response_reg:7:2.08e-22:105:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ06_RS12660
Response regulator, CheB family
Mediterraneibacter gnavus · GCF_020538415
ClassRRTypeCheBLength350 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538415#LIQ06_RS12660Stable P2CS identifier used across views.
GenomeGCF_020538415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length350 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage278 / 350 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa350 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
164-342 aa · 179 aa · 51.1% of protein
Raw token
CheB_methylest:164:1.95e-79:342:180:177- Raw architecture: Response_reg:7:2.08e-22:105:102:111#CheB_methylest:164:1.95e-79:342:180:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538415::NZ_JAJBOJ010000019.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span65607-66659Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ06_12655RefSeq proteinWP_173879187.1
Context group ID
GCF_020538415::NZ_JAJBOJ010000019.1::G00015Context members
LIQ06_RS12660
Partner locus tags
LIQ06_RS12660
Partner old locus tags
LIQ06_12655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173879187.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1AY41Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1AY41_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ06_RS12660Primary locus identifier stored in the genes table.
Old locus tagLIQ06_12655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOJ010000019.1Sequence record reported by the local genomic context database.
Genomic interval65 607-66 659 nt1 053 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 607-66 659 ntGCF_020538415::NZ_JAJBOJ010000019.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538415::NZ_JAJBOJ010000019.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOJ010000019.1All displayed genes belong to this local TCS context.
Neighborhood span65 607-66 659 nt1 053 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 607 nt66 659 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ06_RS12660GCF_020538415#LIQ06_RS12660
RRCheBCurrent focus
65 607-66 659 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299885#G4418_RS10780Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0480573
Simplified PFAM architecture for RROC_0480573
PFAM domain coverage: 276 / 350 aa (78.9%)
1 aa350 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[7-105] | CheB_methylest[164-340]
- Domain count: 2
- Matched identifier: RROC_0480573
- Positioned domains: Response_reg 7-105 ; CheB_methylest 164-340
Cluster members and taxonomy
Representative gene: GCF_013299885#G4418_RS10780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538415
AssemblyASM2053841v1 · Contighaploid
Genome composition3 861 418 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key