1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:3.56e-27:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ06_RS08885
Response regulator NarL family
Mediterraneibacter gnavus · GCF_020538415
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538415#LIQ06_RS08885Stable P2CS identifier used across views.
GenomeGCF_020538415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 206 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.7% of protein
Raw token
HTH_LUXR:149:3.25e-22:201:53:58- Raw architecture: Response_reg:3:3.56e-27:103:101:111#HTH_LUXR:149:3.25e-22:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538415::NZ_JAJBOJ010000012.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28523-29834Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ06_08880RefSeq proteinWP_009245039.1
Context group ID
GCF_020538415::NZ_JAJBOJ010000012.1::G00004Context members
LIQ06_RS08885LIQ06_RS08890
Partner locus tags
LIQ06_RS08885LIQ06_RS08890
Partner old locus tags
LIQ06_08880LIQ06_08885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245039.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q6F763Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q6F763_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ06_RS08885Primary locus identifier stored in the genes table.
Old locus tagLIQ06_08880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOJ010000012.1Sequence record reported by the local genomic context database.
Genomic interval28 523-29 143 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 523-29 834 ntGCF_020538415::NZ_JAJBOJ010000012.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538415::NZ_JAJBOJ010000012.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOJ010000012.1All displayed genes belong to this local TCS context.
Neighborhood span28 523-29 834 nt1 312 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 523 nt29 834 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ06_RS08885GCF_020538415#LIQ06_RS08885
RRNarLCurrent focus
28 523-29 143 nt · Reverse (-)
LIQ06_RS08890GCF_020538415#LIQ06_RS08890
HKClassic
29 148-29 834 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS11225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081636
Simplified PFAM architecture for RROC_2081636
PFAM domain coverage: 160 / 206 aa (77.7%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-109] | GerE[149-201]
- Domain count: 2
- Matched identifier: RROC_2081636
- Positioned domains: Response_reg 3-109 ; Response_reg 3-109 ; GerE 149-201 ; GerE 149-201
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS11225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538415
AssemblyASM2053841v1 · Contighaploid
Genome composition3 861 418 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key