1 Response_reg#1
4-113 aa · 110 aa · 45.5% of protein
Raw token
Response_reg:4:0.00000000000000192:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ06_RS08070
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_020538415
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538415#LIQ06_RS08070Stable P2CS identifier used across views.
GenomeGCF_020538415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 242 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-226 aa · 86 aa · 35.5% of protein
Raw token
LytTR:141:3.15e-20:226:91:98- Raw architecture: Response_reg:4:0.00000000000000192:113:112:111#LytTR:141:3.15e-20:226:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538415::NZ_JAJBOJ010000010.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span101589-102317Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ06_08065RefSeq proteinWP_173879233.1
Context group ID
GCF_020538415::NZ_JAJBOJ010000010.1::G00002Context members
LIQ06_RS08070
Partner locus tags
LIQ06_RS08070
Partner old locus tags
LIQ06_08065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173879233.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1F0K3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1F0K3_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ06_RS08070Primary locus identifier stored in the genes table.
Old locus tagLIQ06_08065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOJ010000010.1Sequence record reported by the local genomic context database.
Genomic interval101 589-102 317 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 589-102 317 ntGCF_020538415::NZ_JAJBOJ010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538415::NZ_JAJBOJ010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOJ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span101 589-102 317 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 589 nt102 317 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ06_RS08070GCF_020538415#LIQ06_RS08070
RRLytTRCurrent focus
101 589-102 317 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299885#G4418_RS10905Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0850925
Simplified PFAM architecture for RROC_0850925
PFAM domain coverage: 199 / 242 aa (82.2%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0850925
- Positioned domains: Response_reg 4-113 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_013299885#G4418_RS10905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538415
AssemblyASM2053841v1 · Contighaploid
Genome composition3 861 418 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key