1 Response_reg#1
7-119 aa · 113 aa · 21.8% of protein
Raw token
Response_reg:7:8.82e-22:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ06_RS06780
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_020538415
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538415#LIQ06_RS06780Stable P2CS identifier used across views.
GenomeGCF_020538415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 519 aa (36.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
425-464 aa · 40 aa · 7.7% of protein
Raw token
HTH_AraC:425:0.0000000074:464:40:423 HTH_AraC#3
477-512 aa · 36 aa · 6.9% of protein
Raw token
HTH_AraC:477:0.000000167:512:36:42- Raw architecture: Response_reg:7:8.82e-22:119:113:111#HTH_AraC:425:0.0000000074:464:40:42#HTH_AraC:477:0.000000167:512:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538415::NZ_JAJBOJ010000008.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71265-74520Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ06_06780RefSeq proteinWP_173878722.1
Context group ID
GCF_020538415::NZ_JAJBOJ010000008.1::G00057Context members
LIQ06_RS20220LIQ06_RS06780
Partner locus tags
LIQ06_RS20220LIQ06_RS06780
Partner old locus tags
LIQ06_06775LIQ06_06780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173878722.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ3F7U1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ3F7U1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ06_RS06780Primary locus identifier stored in the genes table.
Old locus tagLIQ06_06780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOJ010000008.1Sequence record reported by the local genomic context database.
Genomic interval72 961-74 520 nt1 560 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 265-74 520 ntGCF_020538415::NZ_JAJBOJ010000008.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538415::NZ_JAJBOJ010000008.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOJ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span71 265-74 520 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 265 nt74 520 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ06_RS20220GCF_020538415#LIQ06_RS20220
HKClassic
71 265-72 995 nt · Forward (+)
LIQ06_RS06780GCF_020538415#LIQ06_RS06780
RRunclassifiedCurrent focus
72 961-74 520 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471005#DW270_RS13565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127725
Simplified PFAM architecture for RROC_0127725
PFAM domain coverage: 192 / 519 aa (37.0%)
1 aa519 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[7-119] | HTH_18[436-514]
- Domain count: 2
- Matched identifier: RROC_0127725
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; HTH_18 436-514 ; HTH_18 436-514
Cluster members and taxonomy
Representative gene: GCF_003471005#DW270_RS13565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538415
AssemblyASM2053841v1 · Contighaploid
Genome composition3 861 418 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key