1 Response_reg#1
4-117 aa · 114 aa · 22.6% of protein
Raw token
Response_reg:4:3.82e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ06_RS06680
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_020538415
ClassRRTypeunclassifiedLength504 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538415#LIQ06_RS06680Stable P2CS identifier used across views.
GenomeGCF_020538415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length504 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 504 aa (38.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa504 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
404-445 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:404:0.0000709:445:42:423 HTH_AraC#3
459-495 aa · 37 aa · 7.3% of protein
Raw token
HTH_AraC:459:0.0000000108:495:37:42- Raw architecture: Response_reg:4:3.82e-29:117:114:111#HTH_AraC:404:0.0000709:445:42:42#HTH_AraC:459:0.0000000108:495:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538415::NZ_JAJBOJ010000008.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span40786-42300Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ06_06680RefSeq proteinWP_173878742.1
Context group ID
GCF_020538415::NZ_JAJBOJ010000008.1::G00055Context members
LIQ06_RS06680
Partner locus tags
LIQ06_RS06680
Partner old locus tags
LIQ06_06680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173878742.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1AVY8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1AVY8_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ06_RS06680Primary locus identifier stored in the genes table.
Old locus tagLIQ06_06680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOJ010000008.1Sequence record reported by the local genomic context database.
Genomic interval40 786-42 300 nt1 515 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 786-42 300 ntGCF_020538415::NZ_JAJBOJ010000008.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538415::NZ_JAJBOJ010000008.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOJ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span40 786-42 300 nt1 515 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 786 nt42 300 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ06_RS06680GCF_020538415#LIQ06_RS06680
RRunclassifiedCurrent focus
40 786-42 300 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299885#G4418_RS04735Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0154115
Simplified PFAM architecture for RROC_0154115
PFAM domain coverage: 310 / 504 aa (61.5%)
1 aa504 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[152-269] | HTH_18[417-495]
- Domain count: 3
- Matched identifier: RROC_0154115
- Positioned domains: Response_reg 4-116 ; GGDEF_2 152-269 ; HTH_18 417-495
Cluster members and taxonomy
Representative gene: GCF_013299885#G4418_RS04735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538415
AssemblyASM2053841v1 · Contighaploid
Genome composition3 861 418 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key