1 Response_reg#1
6-117 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:6:3.34e-36:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ06_RS05630
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_020538415
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538415#LIQ06_RS05630Stable P2CS identifier used across views.
GenomeGCF_020538415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 232 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:155:3.29e-32:231:77:77- Raw architecture: Response_reg:6:3.34e-36:117:112:111#Trans_reg_C:155:3.29e-32:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538415::NZ_JAJBOJ010000006.1::G00048
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span109502-110200Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ06_05630RefSeq proteinWP_101871985.1
Context group ID
GCF_020538415::NZ_JAJBOJ010000006.1::G00048Context members
LIQ06_RS05630
Partner locus tags
LIQ06_RS05630
Partner old locus tags
LIQ06_05630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101871985.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5P2R7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5P2R7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ06_RS05630Primary locus identifier stored in the genes table.
Old locus tagLIQ06_05630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOJ010000006.1Sequence record reported by the local genomic context database.
Genomic interval109 502-110 200 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span109 502-110 200 ntGCF_020538415::NZ_JAJBOJ010000006.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538415::NZ_JAJBOJ010000006.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOJ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span109 502-110 200 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 502 nt110 200 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ06_RS05630GCF_020538415#LIQ06_RS05630
RROmpRCurrent focus
109 502-110 200 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865355#CDL25_RS06875Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1127889
Simplified PFAM architecture for RROC_1127889
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-117] | Trans_reg_C[157-231]
- Domain count: 2
- Matched identifier: RROC_1127889
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; Trans_reg_C 157-231 ; Trans_reg_C 157-231
Cluster members and taxonomy
Representative gene: GCF_002865355#CDL25_RS06875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020538415
AssemblyASM2053841v1 · Contighaploid
Genome composition3 861 418 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 103 · HK 51 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key