1 Response_reg#1
3-113 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:3:2.62e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS13890
Response regulator OmpR family
Anaerostipes hadrus · GCF_020538085
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538085#LIP56_RS13890Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 223 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:145:2.04e-30:220:77:77- Raw architecture: Response_reg:3:2.62e-37:113:111:111#Trans_reg_C:145:2.04e-30:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538085::NZ_JAJBNS010000035.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9221-11244Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_13890RefSeq proteinWP_226797318.1
Context group ID
GCF_020538085::NZ_JAJBNS010000035.1::G00023Context members
LIP56_RS13890LIP56_RS13895
Partner locus tags
LIP56_RS13890LIP56_RS13895
Partner old locus tags
LIP56_13890LIP56_13895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226797318.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS13890Primary locus identifier stored in the genes table.
Old locus tagLIP56_13890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000035.1Sequence record reported by the local genomic context database.
Genomic interval9 221-9 892 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 221-11 244 ntGCF_020538085::NZ_JAJBNS010000035.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000035.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000035.1All displayed genes belong to this local TCS context.
Neighborhood span9 221-11 244 nt2 024 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 221 nt11 244 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP56_RS13890GCF_020538085#LIP56_RS13890
RROmpRCurrent focus
9 221-9 892 nt · Forward (+)
LIP56_RS13895GCF_020538085#LIP56_RS13895
HKClassic
9 889-11 244 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020538085#LIP56_RS13890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1612354
Simplified PFAM architecture for RROC_1612354
PFAM domain coverage: 187 / 223 aa (83.9%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1612354
- Positioned domains: Response_reg 3-113 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_020538085#LIP56_RS13890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key