1 GGDEF#1
136-276 aa · 141 aa · 32.5% of protein
Raw token
GGDEF:136:6.84e-40:276:153:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS00285
Response regulator, PleD family
Anaerostipes hadrus · GCF_020538085
ClassRRTypePleDLength434 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538085#LIP56_RS00285Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_reg
Protein length434 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage254 / 434 aa (58.5%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa434 aa
Domain-by-domain annotation2 items
2 Response_reg#2
302-414 aa · 113 aa · 26.0% of protein
Raw token
Response_reg:302:1.82e-24:414:114:111- Raw architecture: GGDEF:136:6.84e-40:276:153:160#Response_reg:302:1.82e-24:414:114:111
- Domain description: 1 GGDEF,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538085::NZ_JAJBNS010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span50295-51599Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_00285RefSeq proteinWP_215710889.1
Context group ID
GCF_020538085::NZ_JAJBNS010000001.1::G00001Context members
LIP56_RS00285
Partner locus tags
LIP56_RS00285
Partner old locus tags
LIP56_00285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215710889.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS00285Primary locus identifier stored in the genes table.
Old locus tagLIP56_00285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000001.1Sequence record reported by the local genomic context database.
Genomic interval50 295-51 599 nt1 305 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 295-51 599 ntGCF_020538085::NZ_JAJBNS010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span50 295-51 599 nt1 305 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 295 nt51 599 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP56_RS00285GCF_020538085#LIP56_RS00285
RRPleDCurrent focus
50 295-51 599 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018786105#GPL25_RS01370Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0341355
Simplified PFAM architecture for RROC_0341355
PFAM domain coverage: 257 / 434 aa (59.2%)
1 aa434 aa
GGDEFResponse_reg
- Simplified architecture: GGDEF + Response_reg
- Raw architecture: GGDEF[136-279] | Response_reg[302-414]
- Domain count: 2
- Matched identifier: RROC_0341355
- Positioned domains: GGDEF 136-279 ; Response_reg 302-414
Cluster members and taxonomy
Representative gene: GCF_018786105#GPL25_RS01370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key