1 Response_reg#1
8-117 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:8:1.18e-31:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS12945
Response regulator OmpR family
Anaerostipes hadrus · GCF_020538085
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538085#LIP56_RS12945Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-230 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:155:7.05e-25:230:76:77- Raw architecture: Response_reg:8:1.18e-31:117:111:111#Trans_reg_C:155:7.05e-25:230:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538085::NZ_JAJBNS010000028.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35162-37023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_12945RefSeq proteinWP_226797275.1
Context group ID
GCF_020538085::NZ_JAJBNS010000028.1::G00020Context members
LIP56_RS12940LIP56_RS12945
Partner locus tags
LIP56_RS12940LIP56_RS12945
Partner old locus tags
LIP56_12940LIP56_12945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226797275.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS12945Primary locus identifier stored in the genes table.
Old locus tagLIP56_12945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000028.1Sequence record reported by the local genomic context database.
Genomic interval36 310-37 023 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 162-37 023 ntGCF_020538085::NZ_JAJBNS010000028.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000028.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000028.1All displayed genes belong to this local TCS context.
Neighborhood span35 162-37 023 nt1 862 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 162 nt37 023 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP56_RS12940GCF_020538085#LIP56_RS12940
HKClassic
35 162-36 313 nt · Forward (+)
LIP56_RS12945GCF_020538085#LIP56_RS12945
RROmpRCurrent focus
36 310-37 023 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020538085#LIP56_RS12945The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0975313
Simplified PFAM architecture for RROC_0975313
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-117] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_0975313
- Positioned domains: Response_reg 8-117 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_020538085#LIP56_RS12945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key