1 HisKA#1
149-217 aa · 69 aa · 18.0% of protein
Raw token
HisKA:149:0.00000000000124:217:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS12940
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020538085
ClassHKTypeClassicLength383 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538085#LIP56_RS12940Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length383 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 383 aa (46.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa383 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
265-374 aa · 110 aa · 28.7% of protein
Raw token
HATPase_c:265:9.21e-23:374:111:109- Raw architecture: HisKA:149:0.00000000000124:217:69:64#HATPase_c:265:9.21e-23:374:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538085::NZ_JAJBNS010000028.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35162-37023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_12940RefSeq proteinWP_226797274.1
Context group ID
GCF_020538085::NZ_JAJBNS010000028.1::G00020Context members
LIP56_RS12940LIP56_RS12945
Partner locus tags
LIP56_RS12940LIP56_RS12945
Partner old locus tags
LIP56_12940LIP56_12945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226797274.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS12940Primary locus identifier stored in the genes table.
Old locus tagLIP56_12940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000028.1Sequence record reported by the local genomic context database.
Genomic interval35 162-36 313 nt1 152 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 162-37 023 ntGCF_020538085::NZ_JAJBNS010000028.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000028.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000028.1All displayed genes belong to this local TCS context.
Neighborhood span35 162-37 023 nt1 862 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 162 nt37 023 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP56_RS12940GCF_020538085#LIP56_RS12940
HKClassicCurrent focus
35 162-36 313 nt · Forward (+)
LIP56_RS12945GCF_020538085#LIP56_RS12945
RROmpR
36 310-37 023 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020538085#LIP56_RS12940The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2585434
Simplified PFAM architecture for HKOC_2585434
PFAM domain coverage: 284 / 383 aa (74.2%)
1 aa383 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[16-123] | HisKA[149-216] | HATPase_c[266-373]
- Domain count: 3
- Matched identifier: HKOC_2585434
- Positioned domains: DUF4118 16-123 ; HisKA 149-216 ; HATPase_c 266-373
Cluster members and taxonomy
Representative gene: GCF_020538085#LIP56_RS12940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key