1 Response_reg#1
5-117 aa · 113 aa · 47.5% of protein
Raw token
Response_reg:5:1.16e-16:117:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS12430
Response regulator LytTR family
Anaerostipes hadrus · GCF_020538085
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538085#LIP56_RS12430Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 238 aa (73.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-204 aa · 63 aa · 26.5% of protein
Raw token
LytTR:142:0.000000000000221:204:63:98- Raw architecture: Response_reg:5:1.16e-16:117:115:111#LytTR:142:0.000000000000221:204:63:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538085::NZ_JAJBNS010000026.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28659-29375Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_12430RefSeq proteinWP_044924425.1
Context group ID
GCF_020538085::NZ_JAJBNS010000026.1::G00018Context members
LIP56_RS12430
Partner locus tags
LIP56_RS12430
Partner old locus tags
LIP56_12430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044924425.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS12430Primary locus identifier stored in the genes table.
Old locus tagLIP56_12430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000026.1Sequence record reported by the local genomic context database.
Genomic interval28 659-29 375 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 659-29 375 ntGCF_020538085::NZ_JAJBNS010000026.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000026.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000026.1All displayed genes belong to this local TCS context.
Neighborhood span28 659-29 375 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 659 nt29 375 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP56_RS12430GCF_020538085#LIP56_RS12430
RRLytTRCurrent focus
28 659-29 375 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000876135#TZ59_RS13160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0935444
Simplified PFAM architecture for RROC_0935444
PFAM domain coverage: 175 / 238 aa (73.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[141-203]
- Domain count: 2
- Matched identifier: RROC_0935444
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 141-203 ; LytTR 141-203
Cluster members and taxonomy
Representative gene: GCF_000876135#TZ59_RS13160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key