1 Response_reg#1
2-115 aa · 114 aa · 50.4% of protein
Raw token
Response_reg:2:1e-33:115:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS12295
Response regulator OmpR family
Anaerostipes hadrus · GCF_020538085
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538085#LIP56_RS12295Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 226 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:148:1.57e-34:221:77:77- Raw architecture: Response_reg:2:1e-33:115:114:111#Trans_reg_C:148:1.57e-34:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538085::NZ_JAJBNS010000026.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191-2226Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_12295RefSeq proteinWP_173723553.1
Context group ID
GCF_020538085::NZ_JAJBNS010000026.1::G00017Context members
LIP56_RS12290LIP56_RS12295
Partner locus tags
LIP56_RS12290LIP56_RS12295
Partner old locus tags
LIP56_12290LIP56_12295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173723553.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS12295Primary locus identifier stored in the genes table.
Old locus tagLIP56_12295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000026.1Sequence record reported by the local genomic context database.
Genomic interval1 546-2 226 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span191-2 226 ntGCF_020538085::NZ_JAJBNS010000026.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000026.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000026.1All displayed genes belong to this local TCS context.
Neighborhood span191-2 226 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 nt2 226 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP56_RS12290GCF_020538085#LIP56_RS12290
HKClassic
191-1 549 nt · Reverse (-)
LIP56_RS12295GCF_020538085#LIP56_RS12295
RROmpRCurrent focus
1 546-2 226 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302355#G4946_RS08270Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1428108
Simplified PFAM architecture for RROC_1428108
PFAM domain coverage: 188 / 226 aa (83.2%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-115] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1428108
- Positioned domains: Response_reg 2-115 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_013302355#G4946_RS08270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key